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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030518 through 18771 annotations produced 1 hits



transcript 1 (CG11134):

Annotation Number : CG11134
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030518
Gbrowse : chrX:13632175-13633212 (+) // 100.0 //
Probeset : 1641025_at
Accessions : protein= NP_572916;, nucleotide= NM_132688;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016829 // lyase activity // inferred from electron
FlyMine data for FBgn0030518.
BDGP gene expression has embryonic in situ data for CG11134: 13 pix of staining in 13 body parts.
BioGrid reports that CG11134 interacts with CG30089 CG4005 CG7832 .
TRiP has 1 RNAi stocks for FBgn0030518 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain66 24 of 4 0.20Down
Head205 114 of 4 0.80Down
Eye109 124 of 4 0.40Down
Thoracicoabdominal ganglion75 34 of 4 0.30Down
Salivary gland342 194 of 4 1.26Up
Crop282 134 of 4 1.00None
Midgut408 44 of 4 1.50Up
Tubule1474 1454 of 4 5.40Up
Hindgut316 54 of 4 1.20Up
Heart451 194 of 4 1.66Up
Fat body689 494 of 4 2.53Up
Ovary195 34 of 4 0.70Down
Testis87 14 of 4 0.30Down
Male accessory glands316 24 of 4 1.20Up
Virgin spermatheca447 264 of 4 1.64Up
Mated spermatheca398 224 of 4 1.46Up
Adult carcass418 94 of 4 1.50Up
Larval CNS255 204 of 4 0.94None
Larval Salivary gland579 344 of 4 2.13Up
Larval midgut309 114 of 4 1.14None
Larval tubule1510 624 of 4 5.50Up
Larval hindgut358 254 of 4 1.32Up
Larval fat body518 254 of 4 1.90Up
Larval trachea246 164 of 4 0.90None
Larval carcass175 104 of 4 0.64Down
S2 cells (growing)207 44 of 4 0.76Down
Whole fly272 104 of 4

Looking for FBgn0030518. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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