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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030522 through 18771 annotations produced 1 hits



(CG11103):

Annotation Number : CG11103
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030522
Gbrowse : chrX:13676545-13677419 (+) // 100.0 //
Probeset : 1634839_at
Accessions : protein= NP_001033842;, nucleotide= NM_001038753;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0030522.
BDGP gene expression has embryonic in situ data for CG11103: 6 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030522 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain125 ± 04 of 4 1.60Up
Head90 ± 114 of 4 1.20None
Eye92 ± 44 of 4 1.22None
Thoracicoabdominal ganglion80 ± 44 of 4 1.10None
Salivary gland115 ± 24 of 4 1.52Up
Crop51 ± 24 of 4 0.70Down
Midgut91 ± 34 of 4 1.20None
Tubule71 ± 84 of 4 0.90None
Hindgut77 ± 24 of 4 1.00None
Heart66 ± 34 of 4 0.88None
Fat body61 ± 84 of 4 0.81None
Ovary113 ± 34 of 4 1.50Up
Testis17 ± 04 of 4 0.20Down
Male accessory glands88 ± 44 of 4 1.20None
Virgin spermatheca74 ± 14 of 4 0.98None
Mated spermatheca71 ± 14 of 4 0.94None
Adult carcass64 ± 34 of 4 0.90None
Larval CNS65 ± 24 of 4 0.86None
Larval Salivary gland91 ± 74 of 4 1.21None
Larval midgut54 ± 14 of 4 0.71None
Larval tubule80 ± 34 of 4 1.10None
Larval hindgut51 ± 34 of 4 0.68Down
Larval fat body71 ± 114 of 4 0.90None
Larval trachea88 ± 44 of 4 1.17None
Larval carcass55 ± 54 of 4 0.73None
S2 cells (growing)220 ± 34 of 4 2.90Up
Whole fly75 ± 84 of 4

Looking for FBgn0030522. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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