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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030524 through 18771 annotations produced 1 hits



(CG10993):

Annotation Number : CG10993
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030524
Gbrowse : chrX:13684370-13685137 (-) // 99.44 //
Probeset : 1628040_at
Accessions : protein= NP_572923;, nucleotide= NM_132695;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0030524.
BDGP gene expression has embryonic in situ data for CG10993: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030524 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 03 of 4 0.50Down
Head4 00 of 4 0.30Down
Eye5 10 of 4 0.43Down
Thoracicoabdominal ganglion8 13 of 4 0.70Down
Salivary gland7 30 of 4 0.61None
Crop7 10 of 4 0.50Down
Midgut2 10 of 4 0.20Down
Tubule4 00 of 4 0.30Down
Hindgut5 20 of 4 0.40Down
Heart4 00 of 4 0.31Down
Fat body7 30 of 4 0.55Down
Ovary1 00 of 4 0.10Down
Testis132 54 of 410.20Up
Male accessory glands4 20 of 4 0.30Down
Virgin spermatheca5 00 of 4 0.44Down
Mated spermatheca6 11 of 4 0.46Down
Adult carcass10 20 of 4 0.80None
Larval CNS4 23 of 4 0.38Down
Larval Salivary gland4 10 of 4 0.36Down
Larval midgut3 00 of 4 0.26Down
Larval tubule3 10 of 4 0.20Down
Larval hindgut0 00 of 4 0.07Down
Larval fat body41 104 of 4 3.20None
Larval trachea1 20 of 4 0.12Down
Larval carcass3 00 of 4 0.29Down
S2 cells (growing)17 12 of 4 1.33Up
Whole fly13 04 of 4

Looking for FBgn0030524. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime