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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030528 through 18771 annotations produced 1 hits



(CG11095):

Annotation Number : CG11095
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030528
Gbrowse : chrX:13705731-13706911 (+) // 100.0 //
Probeset : 1637401_at
Accessions : protein= NP_572927;, nucleotide= NM_132699;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0030528.
VDRC has 4 RNAi stocks for FBgn0030528 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 24 of 4 1.30None
Head57 24 of 4 0.90None
Eye66 34 of 4 1.08None
Thoracicoabdominal ganglion76 24 of 4 1.20Up
Salivary gland77 54 of 4 1.25None
Crop89 54 of 4 1.40Up
Midgut75 54 of 4 1.20None
Tubule45 34 of 4 0.70Down
Hindgut69 44 of 4 1.10None
Heart66 24 of 4 1.06None
Fat body96 34 of 4 1.55Up
Ovary116 44 of 4 1.90Up
Testis13 04 of 4 0.20Down
Male accessory glands43 24 of 4 0.70Down
Virgin spermatheca64 24 of 4 1.03None
Mated spermatheca64 34 of 4 1.04None
Adult carcass82 44 of 4 1.30Up
Larval CNS47 44 of 4 0.76Down
Larval Salivary gland68 64 of 4 1.10None
Larval midgut90 44 of 4 1.46Up
Larval tubule60 44 of 4 1.00None
Larval hindgut44 34 of 4 0.71Down
Larval fat body84 84 of 4 1.40None
Larval trachea51 84 of 4 0.84None
Larval carcass76 24 of 4 1.23Up
S2 cells (growing)61 34 of 4 0.99None
Whole fly62 44 of 4

Looking for FBgn0030528. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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