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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030536 through 18771 annotations produced 1 hits



(CG11068):

Annotation Number : CG11068
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030536
Gbrowse : chrX:13849283-13850624 (+) // 100.0 //
Probeset : 1636435_at
Accessions : protein= NP_572936;, nucleotide= NM_132708;
FlyMine data for FBgn0030536.
BDGP gene expression has embryonic in situ data for CG11068: 2 pix of staining in 1 body parts.
BioGrid reports that CG11068 interacts with CG11448 .
VDRC has 3 RNAi stocks for FBgn0030536 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.10Down
Head5 ± 20 of 4 0.10Down
Eye3 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion7 ± 13 of 4 0.10Down
Salivary gland17 ± 30 of 4 0.23Down
Crop14 ± 21 of 4 0.20Down
Midgut28 ± 44 of 4 0.40Down
Tubule9 ± 11 of 4 0.10Down
Hindgut11 ± 11 of 4 0.20Down
Heart3 ± 10 of 4 0.05Down
Fat body8 ± 60 of 4 0.11Down
Ovary4 ± 00 of 4 0.10Down
Testis881 ± 274 of 411.60Up
Male accessory glands9 ± 21 of 4 0.10Down
Virgin spermatheca22 ± 24 of 4 0.30Down
Mated spermatheca22 ± 53 of 4 0.29Down
Adult carcass7 ± 10 of 4 0.10Down
Larval CNS6 ± 23 of 4 0.08Down
Larval Salivary gland7 ± 21 of 4 0.10Down
Larval midgut4 ± 10 of 4 0.06Down
Larval tubule7 ± 01 of 4 0.10Down
Larval hindgut7 ± 11 of 4 0.10Down
Larval fat body108 ± 524 of 4 1.40None
Larval trachea4 ± 41 of 4 0.06Down
Larval carcass11 ± 20 of 4 0.15Down
S2 cells (growing)1 ± 10 of 4 0.02Down
Whole fly76 ± 24 of 4

Looking for FBgn0030536. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime