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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030542 through 18771 annotations produced 1 hits



(CG12481):

Annotation Number : CG12481
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030542
Gbrowse : chrX:14081344-14081674 (+) // 100.0 //
Probeset : 1624374_at
Accessions : protein= NP_001033843;, nucleotide= NM_001038754;
FlyMine data for FBgn0030542.
VDRC has 2 RNAi stocks for FBgn0030542 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head3 ± 10 of 4 0.80None
Eye0 ± 00 of 4 0.25None
Thoracicoabdominal ganglion2 ± 00 of 4 0.60None
Salivary gland11 ± 30 of 4 2.92None
Crop7 ± 10 of 4 1.80None
Midgut3 ± 00 of 4 0.90None
Tubule3 ± 00 of 4 0.90None
Hindgut3 ± 10 of 4 0.80None
Heart2 ± 10 of 4 0.61None
Fat body2 ± 20 of 4 0.73None
Ovary4 ± 00 of 4 1.10None
Testis3 ± 10 of 4 0.90None
Male accessory glands9 ± 40 of 4 2.40None
Virgin spermatheca2 ± 00 of 4 0.52None
Mated spermatheca5 ± 11 of 4 1.41None
Adult carcass6 ± 20 of 4 1.80None
Larval CNS8 ± 23 of 4 2.08None
Larval Salivary gland5 ± 20 of 4 1.49None
Larval midgut8 ± 21 of 4 2.10None
Larval tubule3 ± 10 of 4 1.00None
Larval hindgut6 ± 01 of 4 1.77None
Larval fat body3 ± 20 of 4 0.90None
Larval trachea18 ± 83 of 4 4.79Up
Larval carcass30 ± 44 of 4 7.93Up
S2 cells (growing)6 ± 00 of 4 1.56None
Whole fly3 ± 10 of 4

Looking for FBgn0030542. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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