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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030543 through 18771 annotations produced 1 hits



(CG11585):

Annotation Number : CG11585
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030543
Gbrowse : chrX:14083831-14084703 (+) // 100.0 //
Probeset : 1625790_at
Accessions : protein= NP_572943;, nucleotide= NM_132715;
FlyMine data for FBgn0030543.
TRiP has 1 RNAi stocks for FBgn0030543 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030543 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.60None
Head6 ± 20 of 4 1.00None
Eye1 ± 00 of 4 0.20Down
Thoracicoabdominal ganglion6 ± 20 of 4 0.90None
Salivary gland12 ± 40 of 4 1.82None
Crop10 ± 30 of 4 1.40None
Midgut12 ± 21 of 4 1.80None
Tubule8 ± 01 of 4 1.20None
Hindgut10 ± 20 of 4 1.50None
Heart0 ± 00 of 4 0.13Down
Fat body2 ± 00 of 4 0.35Down
Ovary5 ± 11 of 4 0.80None
Testis4 ± 11 of 4 0.60None
Male accessory glands2 ± 10 of 4 0.40Down
Virgin spermatheca6 ± 20 of 4 0.85None
Mated spermatheca9 ± 20 of 4 1.28None
Adult carcass11 ± 20 of 4 1.60None
Larval CNS5 ± 21 of 4 0.82None
Larval Salivary gland7 ± 00 of 4 1.10None
Larval midgut12 ± 00 of 4 1.73Up
Larval tubule9 ± 01 of 4 1.30None
Larval hindgut19 ± 14 of 4 2.79Up
Larval fat body10 ± 40 of 4 1.50None
Larval trachea27 ± 104 of 4 3.85Up
Larval carcass25 ± 10 of 4 3.58Up
S2 cells (growing)4 ± 20 of 4 0.70None
Whole fly7 ± 10 of 4

Looking for FBgn0030543. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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