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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030544 through 18771 annotations produced 1 hits



(CG13403):

Annotation Number : CG13403
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030544
Gbrowse : chrX:14085388-14086019 (-) // 100.0 //
Probeset : 1638477_at
Accessions : protein= NP_572944;, nucleotide= NM_132716;
FlyMine data for FBgn0030544.
VDRC has 5 RNAi stocks for FBgn0030544 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.30None
Head4 20 of 4 0.90None
Eye2 00 of 4 0.45None
Thoracicoabdominal ganglion0 00 of 4 0.20None
Salivary gland7 10 of 4 1.63None
Crop1 00 of 4 0.20None
Midgut4 10 of 4 0.90None
Tubule4 00 of 4 0.90None
Hindgut3 10 of 4 0.90None
Heart2 00 of 4 0.45None
Fat body2 20 of 4 0.64None
Ovary4 00 of 4 1.10None
Testis7 00 of 4 1.60None
Male accessory glands7 20 of 4 1.60None
Virgin spermatheca7 10 of 4 1.63None
Mated spermatheca5 10 of 4 1.24None
Adult carcass7 20 of 4 1.70None
Larval CNS1 10 of 4 0.37None
Larval Salivary gland14 11 of 4 3.29Up
Larval midgut5 20 of 4 1.27None
Larval tubule2 10 of 4 0.60None
Larval hindgut49 64 of 410.94Up
Larval fat body8 20 of 4 1.90None
Larval trachea187 404 of 441.99Up
Larval carcass333 564 of 474.48Up
S2 cells (growing)3 10 of 4 0.72None
Whole fly4 11 of 4

Looking for FBgn0030544. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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