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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030545 through 18771 annotations produced 1 hits



(CG11590):

Annotation Number : CG11590
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030545
Gbrowse : chrX:14094236-14094940 (+) // 100.0 //
Probeset : 1635969_at
Accessions : protein= NP_572945;, nucleotide= NM_132717;
FlyMine data for FBgn0030545.
BioGrid reports that CG11590 interacts with CG12811 .
VDRC has 2 RNAi stocks for FBgn0030545 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain120 ± 14 of 4 0.70Down
Head139 ± 44 of 4 0.80Down
Eye192 ± 64 of 4 1.07None
Thoracicoabdominal ganglion120 ± 24 of 4 0.70Down
Salivary gland193 ± 94 of 4 1.07None
Crop185 ± 74 of 4 1.00None
Midgut138 ± 24 of 4 0.80Down
Tubule146 ± 154 of 4 0.80Down
Hindgut159 ± 44 of 4 0.90None
Heart221 ± 134 of 4 1.23Up
Fat body155 ± 124 of 4 0.86None
Ovary182 ± 14 of 4 1.00None
Testis138 ± 24 of 4 0.80Down
Male accessory glands476 ± 354 of 4 2.60Up
Virgin spermatheca313 ± 54 of 4 1.74Up
Mated spermatheca302 ± 114 of 4 1.67Up
Adult carcass123 ± 74 of 4 0.70Down
Larval CNS301 ± 184 of 4 1.67Up
Larval Salivary gland479 ± 144 of 4 2.66Up
Larval midgut186 ± 34 of 4 1.03None
Larval tubule298 ± 74 of 4 1.70Up
Larval hindgut197 ± 74 of 4 1.09None
Larval fat body705 ± 814 of 4 3.90Up
Larval trachea303 ± 284 of 4 1.68Up
Larval carcass249 ± 34 of 4 1.38Up
S2 cells (growing)220 ± 54 of 4 1.22Up
Whole fly180 ± 84 of 4

Looking for FBgn0030545. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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