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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030552 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L38 (mRpL38):

Annotation Number : CG15871
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030552
Gbrowse : chrX:14120323-14121983 (+) // 100.0 //
Probeset : 1638073_at
Accessions : protein= NP_511152;, nucleotide= NM_078597;
Pathway : 0005762 // mitochondrial large ribosomal subunit // inferred from sequence or structural similarity /// 0005840 // ribos
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0008429 // phosphat
FlyMine data for FBgn0030552.
BioGrid reports that CG15871 interacts with CG1970 CG2852 CG3924 CG6226 CG6988 CG7008 CG9593 .
VDRC has 2 RNAi stocks for FBgn0030552 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain247 ± 24 of 4 1.10None
Head166 ± 114 of 4 0.70Down
Eye189 ± 34 of 4 0.85None
Thoracicoabdominal ganglion248 ± 104 of 4 1.10None
Salivary gland103 ± 54 of 4 0.46Down
Crop176 ± 64 of 4 0.80Down
Midgut148 ± 34 of 4 0.70Down
Tubule82 ± 24 of 4 0.40Down
Hindgut204 ± 64 of 4 0.90None
Heart207 ± 84 of 4 0.93None
Fat body184 ± 254 of 4 0.82None
Ovary338 ± 84 of 4 1.50Up
Testis57 ± 24 of 4 0.30Down
Male accessory glands103 ± 64 of 4 0.50Down
Virgin spermatheca78 ± 44 of 4 0.35Down
Mated spermatheca85 ± 34 of 4 0.38Down
Adult carcass219 ± 24 of 4 1.00None
Larval CNS207 ± 154 of 4 0.92None
Larval Salivary gland155 ± 14 of 4 0.69Down
Larval midgut90 ± 44 of 4 0.41Down
Larval tubule104 ± 44 of 4 0.50Down
Larval hindgut228 ± 74 of 4 1.02None
Larval fat body120 ± 74 of 4 0.50Down
Larval trachea222 ± 204 of 4 1.00None
Larval carcass111 ± 124 of 4 0.50Down
S2 cells (growing)183 ± 54 of 4 0.82None
Whole fly223 ± 154 of 4

Looking for FBgn0030552. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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