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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030554 through 18771 annotations produced 1 hits



(CG1434):

Annotation Number : CG1434
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030554
Gbrowse : chrX:14132021-14134188 (+) // 100.0 //
Probeset : 1637823_at
Accessions : protein= NP_572950;, nucleotide= NM_132722;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred fro
FlyMine data for FBgn0030554.
BDGP gene expression has embryonic in situ data for CG1434: 30 pix of staining in 19 body parts.
VDRC has 3 RNAi stocks for FBgn0030554 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 24 of 4 0.50Down
Head45 ± 24 of 4 0.90None
Eye139 ± 74 of 4 2.63Up
Thoracicoabdominal ganglion27 ± 24 of 4 0.50Down
Salivary gland45 ± 64 of 4 0.87None
Crop42 ± 34 of 4 0.80None
Midgut23 ± 21 of 4 0.40Down
Tubule29 ± 22 of 4 0.60Down
Hindgut33 ± 34 of 4 0.60Down
Heart52 ± 44 of 4 1.00None
Fat body36 ± 54 of 4 0.69None
Ovary88 ± 14 of 4 1.70Up
Testis11 ± 02 of 4 0.20Down
Male accessory glands64 ± 64 of 4 1.20None
Virgin spermatheca13 ± 20 of 4 0.26Down
Mated spermatheca18 ± 10 of 4 0.35Down
Adult carcass42 ± 34 of 4 0.80None
Larval CNS44 ± 34 of 4 0.85None
Larval Salivary gland46 ± 14 of 4 0.89None
Larval midgut31 ± 14 of 4 0.59Down
Larval tubule27 ± 11 of 4 0.50Down
Larval hindgut37 ± 14 of 4 0.70None
Larval fat body24 ± 33 of 4 0.50Down
Larval trachea53 ± 74 of 4 1.01None
Larval carcass25 ± 24 of 4 0.49Down
S2 cells (growing)68 ± 54 of 4 1.29None
Whole fly52 ± 64 of 4

Looking for FBgn0030554. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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