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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030555 through 18771 annotations produced 1 hits

CG1839 (Fbxl4):

Annotation Number : CG1839
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030555
Gbrowse : chrX:14128438-14131956 (-) // 100.0 //
Probeset : 1629569_at
Accessions : protein= NP_572951;, nucleotide= NM_132723;
FlyMine data for FBgn0030555.
TRiP has 1 RNAi stocks for FBgn0030555 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030555 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain139 84 of 4 2.00Up
Head335 194 of 4 4.80Up
Eye1222 304 of 417.36Up
Thoracicoabdominal ganglion105 34 of 4 1.50Up
Salivary gland52 84 of 4 0.74None
Crop46 24 of 4 0.70Down
Midgut34 24 of 4 0.50Down
Tubule68 54 of 4 1.00None
Hindgut44 04 of 4 0.60Down
Heart82 44 of 4 1.17None
Fat body52 24 of 4 0.75Down
Ovary112 44 of 4 1.60Up
Testis14 24 of 4 0.20Down
Male accessory glands67 34 of 4 1.00None
Virgin spermatheca59 14 of 4 0.84Down
Mated spermatheca65 54 of 4 0.93None
Adult carcass54 14 of 4 0.80Down
Larval CNS67 44 of 4 0.97None
Larval Salivary gland45 34 of 4 0.65Down
Larval midgut43 34 of 4 0.62Down
Larval tubule70 24 of 4 1.00None
Larval hindgut51 64 of 4 0.73Down
Larval fat body41 24 of 4 0.60Down
Larval trachea53 244 of 4 0.76None
Larval carcass54 64 of 4 0.77None
S2 cells (growing)10 04 of 4 0.15Down
Whole fly70 24 of 4

Looking for FBgn0030555. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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