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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030558 through 18771 annotations produced 1 hits


Annotation Number : CG1461
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030558
Gbrowse : chrX:14155255-14158879 (+) // 100.0 //
Probeset : 1641454_at
Accessions : protein= NP_572953;, nucleotide= NM_132725;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004838 // L-tyrosine:2-oxoglutarate aminotran
FlyMine data for FBgn0030558.
Homophila reports that CG1461 is a close match (2e-130) to human gene TAT (NP_000344), a gene associated with Tyrosinemia, type II (3).
BioGrid reports that CG1461 interacts with CG17325 CG32067 CG15634 CG18584 CG5792 CG7070 CG8907 .
VDRC has 1 RNAi stocks for FBgn0030558 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 24 of 4 0.10Down
Head1538 474 of 4 6.30Up
Eye2112 714 of 4 8.59Up
Thoracicoabdominal ganglion29 94 of 4 0.10Down
Salivary gland18 32 of 4 0.07Down
Crop6 11 of 4 0.00Down
Midgut10 00 of 4 0.00Down
Tubule13 13 of 4 0.10Down
Hindgut11 13 of 4 0.00Down
Heart73 44 of 4 0.30Down
Fat body41 104 of 4 0.17Down
Ovary5 01 of 4 0.00Down
Testis5 02 of 4 0.00Down
Male accessory glands13 11 of 4 0.10Down
Virgin spermatheca10 02 of 4 0.04Down
Mated spermatheca12 23 of 4 0.05Down
Adult carcass1683 814 of 4 6.80Up
Larval CNS10 04 of 4 0.04Down
Larval Salivary gland9 20 of 4 0.04Down
Larval midgut7 10 of 4 0.03Down
Larval tubule10 12 of 4 0.00Down
Larval hindgut16 34 of 4 0.07Down
Larval fat body14 23 of 4 0.10Down
Larval trachea41 384 of 4 0.17Down
Larval carcass1249 1534 of 4 5.08Up
S2 cells (growing)13 14 of 4 0.06Down
Whole fly245 164 of 4

Looking for FBgn0030558. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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