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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030559 through 18771 annotations produced 1 hits



(CG13404):

Annotation Number : CG13404
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030559
Gbrowse : chrX:14159600-14160371 (-) // 100.0 //
Probeset : 1634502_at
Accessions : protein= NP_572954;, nucleotide= NM_132726;
FlyMine data for FBgn0030559.
VDRC has 2 RNAi stocks for FBgn0030559 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 ± 84 of 419.30Up
Head25 ± 34 of 4 4.00Up
Eye24 ± 24 of 4 3.82Up
Thoracicoabdominal ganglion83 ± 84 of 413.00Up
Salivary gland5 ± 10 of 4 0.80None
Crop5 ± 10 of 4 0.80None
Midgut12 ± 40 of 4 2.00None
Tubule8 ± 00 of 4 1.30Up
Hindgut9 ± 10 of 4 1.50None
Heart2 ± 00 of 4 0.40None
Fat body8 ± 20 of 4 1.32None
Ovary4 ± 10 of 4 0.70None
Testis8 ± 10 of 4 1.30None
Male accessory glands12 ± 30 of 4 2.00None
Virgin spermatheca6 ± 10 of 4 0.99None
Mated spermatheca5 ± 10 of 4 0.85None
Adult carcass10 ± 20 of 4 1.60None
Larval CNS43 ± 74 of 4 6.76Up
Larval Salivary gland5 ± 20 of 4 0.93None
Larval midgut15 ± 10 of 4 2.36Up
Larval tubule5 ± 10 of 4 0.80None
Larval hindgut9 ± 10 of 4 1.51None
Larval fat body8 ± 20 of 4 1.30None
Larval trachea5 ± 10 of 4 0.78None
Larval carcass13 ± 20 of 4 2.05None
S2 cells (growing)7 ± 11 of 4 1.13None
Whole fly6 ± 20 of 4

Looking for FBgn0030559. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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