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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030569 through 18771 annotations produced 1 hits


Annotation Number : CG9411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030569
Gbrowse : chrX:14366440-14374112 (-) // 99.86 //
Probeset : 1629458_at
Accessions : protein= NP_572962;, nucleotide= NM_132734;
FlyMine data for FBgn0030569.
BDGP gene expression has embryonic in situ data for CG9411: 17 pix of staining in 9 body parts.
TRiP has 1 RNAi stocks for FBgn0030569 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10None
Head4 20 of 4 0.50None
Eye1 00 of 4 0.17None
Thoracicoabdominal ganglion4 20 of 4 0.50None
Salivary gland16 20 of 4 1.64None
Crop147 94 of 414.30Up
Midgut23 23 of 4 2.30None
Tubule2 00 of 4 0.20Down
Hindgut10 41 of 4 1.00None
Heart1 00 of 4 0.14None
Fat body8 40 of 4 0.78None
Ovary0 00 of 4 0.10None
Testis0 00 of 4 0.10None
Male accessory glands3 10 of 4 0.40None
Virgin spermatheca8 20 of 4 0.79None
Mated spermatheca9 30 of 4 0.89None
Adult carcass5 20 of 4 0.50None
Larval CNS5 31 of 4 0.55None
Larval Salivary gland2 10 of 4 0.28None
Larval midgut3 20 of 4 0.35None
Larval tubule2 00 of 4 0.20None
Larval hindgut57 64 of 4 5.61Up
Larval fat body3 10 of 4 0.40None
Larval trachea5 30 of 4 0.53None
Larval carcass2 10 of 4 0.20None
S2 cells (growing)0 00 of 4 0.08None
Whole fly10 61 of 4

Looking for FBgn0030569. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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