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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030577 through 18771 annotations produced 1 hits



(CG5334):

Annotation Number : CG5334
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030577
Gbrowse : chrX:14669391-14670151 (+) // 100.0 //
Probeset : 1636725_at
Accessions : protein= NP_572969;, nucleotide= NM_132741;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from e
FlyMine data for FBgn0030577.
BioGrid reports that CG5334 interacts with CG9941 .
VDRC has 1 RNAi stocks for FBgn0030577 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.30None
Head3 10 of 4 1.00None
Eye1 00 of 4 0.31None
Thoracicoabdominal ganglion1 00 of 4 0.30None
Salivary gland2 00 of 4 0.74None
Crop2 00 of 4 0.60None
Midgut2 00 of 4 0.60None
Tubule2 00 of 4 0.60None
Hindgut1 00 of 4 0.40None
Heart0 00 of 4 0.09None
Fat body5 20 of 4 1.59None
Ovary1 00 of 4 0.50None
Testis41 24 of 411.30Up
Male accessory glands5 30 of 4 1.50None
Virgin spermatheca5 00 of 4 1.58None
Mated spermatheca4 20 of 4 1.18None
Adult carcass7 30 of 4 2.00None
Larval CNS3 10 of 4 0.97None
Larval Salivary gland7 00 of 4 1.97None
Larval midgut4 10 of 4 1.30None
Larval tubule2 00 of 4 0.80None
Larval hindgut2 10 of 4 0.66None
Larval fat body9 41 of 4 2.70None
Larval trachea1 00 of 4 0.28None
Larval carcass1 00 of 4 0.29None
S2 cells (growing)0 00 of 4 0.23None
Whole fly3 10 of 4

Looking for FBgn0030577. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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