FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030577 through 18771 annotations produced 1 hits

(CG5334):

Annotation Number : CG5334
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030577
Gbrowse : chrX:14669391-14670151 (+) // 100.0 //
Probeset : 1636725_at
Accessions : protein= NP_572969;, nucleotide= NM_132741;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from e
FlyMine data for FBgn0030577.
BioGrid reports that CG5334 interacts with CG9941 .
VDRC has 1 RNAi stocks for FBgn0030577 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.30	None
Head	3 ± 1	0 of 4	1.00	None
Eye	1 ± 0	0 of 4	0.31	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.30	None
Salivary gland	2 ± 0	0 of 4	0.74	None
Crop	2 ± 0	0 of 4	0.60	None
Midgut	2 ± 0	0 of 4	0.60	None
Tubule	2 ± 0	0 of 4	0.60	None
Hindgut	1 ± 0	0 of 4	0.40	None
Heart	0 ± 0	0 of 4	0.09	None
Fat body	5 ± 2	0 of 4	1.59	None
Ovary	1 ± 0	0 of 4	0.50	None
Testis	41 ± 2	4 of 4	11.30	Up
Male accessory glands	5 ± 3	0 of 4	1.50	None
Virgin spermatheca	5 ± 0	0 of 4	1.58	None
Mated spermatheca	4 ± 2	0 of 4	1.18	None
Adult carcass	7 ± 3	0 of 4	2.00	None
Larval CNS	3 ± 1	0 of 4	0.97	None
Larval Salivary gland	7 ± 0	0 of 4	1.97	None
Larval midgut	4 ± 1	0 of 4	1.30	None
Larval tubule	2 ± 0	0 of 4	0.80	None
Larval hindgut	2 ± 1	0 of 4	0.66	None
Larval fat body	9 ± 4	1 of 4	2.70	None
Larval trachea	1 ± 0	0 of 4	0.28	None
Larval carcass	1 ± 0	0 of 4	0.29	None
S2 cells (growing)	0 ± 0	0 of 4	0.23	None
Whole fly	3 ± 1	0 of 4

Looking for FBgn0030577. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720