FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030581 through 18771 annotations produced 3 hits

(CG14408):

Annotation Number : CG14408
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030581
Gbrowse : chrX:14722783-14726090 (-) // 100.0 //
Probeset : 1625335_at
Accessions : protein= NP_001033844; /// NP_001138197; /// NP_572971; /// NP_727792;, nucleotide= NM_001038755; /// NM_001144725; /// NM_132743; /// NM_167413;
Interpro : 0017124 // SH3 domain binding // inferred from sequence or structural similarity
FlyMine data for FBgn0030581.
BDGP gene expression has embryonic in situ data for CG14408: 13 pix of staining in 7 body parts.
BioGrid reports that CG14408 interacts with CG15764 CG17785 CG5053 CG7238 CG9610 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	36 ± 2	4 of 4	4.30	Up
Head	9 ± 2	0 of 4	1.10	None
Eye	7 ± 2	0 of 4	0.83	None
Thoracicoabdominal ganglion	9 ± 2	0 of 4	1.10	None
Salivary gland	17 ± 0	0 of 4	2.02	Up
Crop	3 ± 1	0 of 4	0.40	Down
Midgut	4 ± 0	0 of 4	0.50	Down
Tubule	4 ± 0	0 of 4	0.50	Down
Hindgut	7 ± 0	0 of 4	0.90	None
Heart	3 ± 2	0 of 4	0.41	None
Fat body	12 ± 5	0 of 4	1.50	None
Ovary	14 ± 2	1 of 4	1.70	None
Testis	2 ± 1	0 of 4	0.20	Down
Male accessory glands	10 ± 0	0 of 4	1.20	None
Virgin spermatheca	12 ± 2	0 of 4	1.43	None
Mated spermatheca	17 ± 3	1 of 4	2.06	None
Adult carcass	5 ± 3	0 of 4	0.70	None
Larval CNS	17 ± 2	3 of 4	2.07	Up
Larval Salivary gland	14 ± 1	1 of 4	1.66	None
Larval midgut	4 ± 1	0 of 4	0.47	None
Larval tubule	7 ± 1	0 of 4	0.80	None
Larval hindgut	4 ± 1	0 of 4	0.57	None
Larval fat body	6 ± 1	0 of 4	0.70	None
Larval trachea	6 ± 0	0 of 4	0.78	None
Larval carcass	9 ± 1	0 of 4	1.16	None
S2 cells (growing)	8 ± 0	0 of 4	1.01	None
Whole fly	8 ± 1	0 of 4

(CG14408):

Annotation Number : CG14408
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030581
Gbrowse : chrX:14722783-14726090 (-) // 100.0 //
Probeset : 1628948_a_at
Accessions : protein= NP_001033844; /// NP_001138197; /// NP_572971; /// NP_727792;, nucleotide= NM_001038755; /// NM_001144725; /// NM_132743; /// NM_167413;
Interpro : 0017124 // SH3 domain binding // inferred from sequence or structural similarity
FlyMine data for FBgn0030581.
BDGP gene expression has embryonic in situ data for CG14408: 13 pix of staining in 7 body parts.
BioGrid reports that CG14408 interacts with CG15764 CG17785 CG5053 CG7238 CG9610 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	61 ± 2	4 of 4	6.50	Up
Head	16 ± 2	4 of 4	1.70	None
Eye	40 ± 3	4 of 4	4.30	Up
Thoracicoabdominal ganglion	45 ± 4	4 of 4	4.90	Up
Salivary gland	17 ± 4	2 of 4	1.83	None
Crop	17 ± 1	4 of 4	1.80	Up
Midgut	9 ± 1	0 of 4	1.00	None
Tubule	12 ± 0	2 of 4	1.30	Up
Hindgut	14 ± 0	4 of 4	1.60	Up
Heart	12 ± 0	4 of 4	1.28	None
Fat body	8 ± 2	1 of 4	0.89	None
Ovary	16 ± 0	4 of 4	1.80	Up
Testis	7 ± 0	3 of 4	0.80	None
Male accessory glands	19 ± 2	4 of 4	2.10	Up
Virgin spermatheca	16 ± 1	4 of 4	1.72	Up
Mated spermatheca	18 ± 1	4 of 4	1.93	Up
Adult carcass	13 ± 4	2 of 4	1.40	None
Larval CNS	14 ± 2	4 of 4	1.59	Up
Larval Salivary gland	12 ± 1	3 of 4	1.32	None
Larval midgut	12 ± 0	0 of 4	1.33	Up
Larval tubule	9 ± 2	3 of 4	1.00	None
Larval hindgut	11 ± 1	4 of 4	1.18	None
Larval fat body	7 ± 1	0 of 4	0.80	None
Larval trachea	11 ± 2	4 of 4	1.27	None
Larval carcass	10 ± 1	4 of 4	1.11	None
S2 cells (growing)	17 ± 1	4 of 4	1.86	Up
Whole fly	9 ± 0	3 of 4

(CG14408):

Annotation Number : CG14408
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030581
Gbrowse : chrX:14721086-14724504 (-) // 100.0 //
Probeset : 1634311_at
Accessions : protein= NP_001033844; /// NP_001138197; /// NP_572971; /// NP_727792;, nucleotide= NM_001038755; /// NM_001144725; /// NM_132743; /// NM_167413;
Interpro : 0017124 // SH3 domain binding // inferred from sequence or structural similarity
FlyMine data for FBgn0030581.
BDGP gene expression has embryonic in situ data for CG14408: 13 pix of staining in 7 body parts.
BioGrid reports that CG14408 interacts with CG15764 CG17785 CG5053 CG7238 CG9610 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	395 ± 12	4 of 4	6.50	Up
Head	105 ± 9	4 of 4	1.70	Up
Eye	59 ± 0	4 of 4	0.99	None
Thoracicoabdominal ganglion	265 ± 11	4 of 4	4.40	Up
Salivary gland	44 ± 7	4 of 4	0.72	None
Crop	27 ± 5	4 of 4	0.50	Down
Midgut	28 ± 2	4 of 4	0.50	Down
Tubule	19 ± 2	3 of 4	0.30	Down
Hindgut	33 ± 1	4 of 4	0.60	Down
Heart	25 ± 0	4 of 4	0.42	Down
Fat body	45 ± 5	4 of 4	0.74	Down
Ovary	114 ± 3	4 of 4	1.90	Up
Testis	8 ± 0	2 of 4	0.10	Down
Male accessory glands	130 ± 6	4 of 4	2.10	Up
Virgin spermatheca	48 ± 6	4 of 4	0.80	None
Mated spermatheca	53 ± 2	4 of 4	0.89	None
Adult carcass	43 ± 3	4 of 4	0.70	Down
Larval CNS	92 ± 9	4 of 4	1.53	Up
Larval Salivary gland	29 ± 3	4 of 4	0.49	Down
Larval midgut	36 ± 2	4 of 4	0.61	Down
Larval tubule	25 ± 1	4 of 4	0.40	Down
Larval hindgut	31 ± 1	4 of 4	0.51	Down
Larval fat body	17 ± 2	4 of 4	0.30	Down
Larval trachea	19 ± 0	3 of 4	0.32	Down
Larval carcass	27 ± 1	4 of 4	0.45	Down
S2 cells (growing)	47 ± 3	4 of 4	0.79	None
Whole fly	60 ± 5	4 of 4

Looking for FBgn0030581. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720