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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030582 through 18771 annotations produced 1 hits



(CG14411):

Annotation Number : CG14411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030582
Gbrowse : chrX:14726670-14730303 (+) // 100.0 //
Probeset : 1624168_at
Accessions : protein= NP_001162756; /// NP_001162757; /// NP_572972; /// NP_996436;, nucleotide= NM_001169285; /// NM_001169286; /// NM_132744; /// NM_206713;
Interpro : 0016791 // phosphatase activity // inferred from electronic annotation
FlyMine data for FBgn0030582.
Homophila reports that CG14411 is a close match (6e-22) to human gene CMT4B2;MTMR13;SBF2 (NP_112224), a gene associated with Charcot-Marie-Tooth disease, type 4B2, 604563 (3).
BioGrid reports that CG14411 interacts with CG1999 CG8604 .
TRiP has 1 RNAi stocks for FBgn0030582 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030582 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain253 44 of 4 1.20Up
Head154 84 of 4 0.70Down
Eye387 154 of 4 1.80Up
Thoracicoabdominal ganglion292 84 of 4 1.40Up
Salivary gland272 274 of 4 1.27None
Crop263 24 of 4 1.20Up
Midgut238 64 of 4 1.10None
Tubule185 14 of 4 0.90Down
Hindgut236 64 of 4 1.10None
Heart198 184 of 4 0.92None
Fat body88 74 of 4 0.41Down
Ovary444 104 of 4 2.10Up
Testis204 94 of 4 1.00None
Male accessory glands250 224 of 4 1.20None
Virgin spermatheca176 54 of 4 0.82Down
Mated spermatheca208 84 of 4 0.97None
Adult carcass132 74 of 4 0.60Down
Larval CNS252 114 of 4 1.18Up
Larval Salivary gland281 114 of 4 1.31Up
Larval midgut304 134 of 4 1.42Up
Larval tubule253 44 of 4 1.20Up
Larval hindgut260 84 of 4 1.21Up
Larval fat body214 104 of 4 1.00None
Larval trachea481 464 of 4 2.24Up
Larval carcass229 154 of 4 1.07None
S2 cells (growing)19 24 of 4 0.09Down
Whole fly214 74 of 4

Looking for FBgn0030582. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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