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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030583 through 18771 annotations produced 1 hits


Annotation Number : CG14410
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030583
Gbrowse : chrX:14731006-14731363 (+) // 100.0 //
Probeset : 1628317_at
Accessions : protein= NP_572973;, nucleotide= NM_132745;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030583.
BioGrid reports that CG14410 interacts with CG15209 CG4554 CG6283 CG8697 CG9083 CG4711 CG17190 CG1728 CG1740 CG18806 CG3069 CG32604 CG3394 CG3557 CG4059 CG4312 CG4800 CG5532 CG8947 CG9184 CG17161 .
VDRC has 3 RNAi stocks for FBgn0030583 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 20 of 4 0.20Down
Head3 10 of 4 0.10Down
Eye2 10 of 4 0.09Down
Thoracicoabdominal ganglion8 10 of 4 0.30Down
Salivary gland3 10 of 4 0.14Down
Crop12 30 of 4 0.50Down
Midgut1 00 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut8 00 of 4 0.30Down
Heart3 00 of 4 0.12Down
Fat body6 50 of 4 0.23Down
Ovary33 24 of 4 1.30None
Testis1 00 of 4 0.10Down
Male accessory glands696 604 of 426.40Up
Virgin spermatheca4 10 of 4 0.15Down
Mated spermatheca1 00 of 4 0.05Down
Adult carcass4 10 of 4 0.20Down
Larval CNS1 10 of 4 0.07Down
Larval Salivary gland6 20 of 4 0.23Down
Larval midgut3 10 of 4 0.13Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut4 10 of 4 0.15Down
Larval fat body6 20 of 4 0.20Down
Larval trachea3 30 of 4 0.11Down
Larval carcass6 20 of 4 0.24Down
S2 cells (growing)30 11 of 4 1.14None
Whole fly26 20 of 4

Looking for FBgn0030583. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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