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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030586 through 18771 annotations produced 1 hits


Annotation Number : CG12539
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030586
Gbrowse : chrX:14736647-14738873 (-) // 100.0 //
Probeset : 1626031_at
Accessions : protein= NP_572976;, nucleotide= NM_132748;
Interpro : "0004344 // glucose dehydrogenase activity // inferred from sequence or structural similarity /// 0004344 // glucose deh
FlyMine data for FBgn0030586.
BDGP gene expression has embryonic in situ data for CG12539: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030586 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 1.50None
Head2 10 of 4 0.80None
Eye0 00 of 4 0.25None
Thoracicoabdominal ganglion3 10 of 4 1.00None
Salivary gland17 50 of 4 4.69None
Crop8 10 of 4 2.20None
Midgut5 10 of 4 1.60None
Tubule5 00 of 4 1.40Up
Hindgut4 10 of 4 1.10None
Heart1 00 of 4 0.43None
Fat body5 30 of 4 1.55None
Ovary1 00 of 4 0.40None
Testis2 00 of 4 0.70None
Male accessory glands3 10 of 4 0.80None
Virgin spermatheca4 10 of 4 1.12None
Mated spermatheca5 10 of 4 1.60None
Adult carcass4 10 of 4 1.30None
Larval CNS3 10 of 4 1.05None
Larval Salivary gland4 10 of 4 1.30None
Larval midgut10 40 of 4 2.95None
Larval tubule6 10 of 4 1.80None
Larval hindgut83 244 of 422.79Up
Larval fat body7 30 of 4 2.00None
Larval trachea40 233 of 411.05None
Larval carcass261 534 of 471.20Up
S2 cells (growing)4 10 of 4 1.30None
Whole fly3 10 of 4

Looking for FBgn0030586. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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