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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030587 through 18771 annotations produced 1 hits



(CG9522):

Annotation Number : CG9522
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030587
Gbrowse : chrX:14740500-14742837 (-) // 100.0 //
Probeset : 1640261_at
Accessions : protein= NP_644677;, nucleotide= NM_139271;
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0008812 // choline dehydrogenase activity // infer
FlyMine data for FBgn0030587.
BDGP gene expression has embryonic in situ data for CG9522: 12 pix of staining in 2 body parts.
VDRC has 1 RNAi stocks for FBgn0030587 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 01 of 4 1.20None
Head6 04 of 4 2.50Up
Eye11 14 of 4 4.35Up
Thoracicoabdominal ganglion4 00 of 4 1.80None
Salivary gland8 40 of 4 3.05None
Crop6 01 of 4 2.30Up
Midgut3 00 of 4 1.20None
Tubule3 01 of 4 1.40Up
Hindgut3 01 of 4 1.40None
Heart1 10 of 4 0.65None
Fat body5 20 of 4 1.80None
Ovary0 00 of 4 0.30None
Testis0 00 of 4 0.10None
Male accessory glands5 21 of 4 1.80None
Virgin spermatheca9 12 of 4 3.32Up
Mated spermatheca9 33 of 4 3.61None
Adult carcass5 11 of 4 2.10None
Larval CNS4 24 of 4 1.77None
Larval Salivary gland4 00 of 4 1.48None
Larval midgut3 00 of 4 1.22None
Larval tubule2 01 of 4 0.70None
Larval hindgut3 13 of 4 1.25None
Larval fat body5 01 of 4 2.10Up
Larval trachea2 10 of 4 0.97None
Larval carcass2 00 of 4 0.96None
S2 cells (growing)11 14 of 4 4.18Up
Whole fly2 01 of 4

Looking for FBgn0030587. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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