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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030590 through 18771 annotations produced 1 hits



(CG9518):

Annotation Number : CG9518
Flybase ID : FBgn0030590
Gbrowse : chrX:14757021-14765207 (-) // 100.0 //
Probeset : 1626695_at
Accessions : protein= NP_572979;, nucleotide= NM_132751;
Interpro : "0008812 // choline dehydrogenase activity // inferred from sequence or structural similarity /// 0008812 // choline deh
FlyMine data for FBgn0030590.
BDGP gene expression has embryonic in situ data for CG9518: 10 pix of staining in 6 body parts.
VDRC has 1 RNAi stocks for FBgn0030590 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 04 of 4 2.30Up
Head2 10 of 4 0.80None
Eye1 00 of 4 0.57None
Thoracicoabdominal ganglion3 00 of 4 1.00None
Salivary gland12 51 of 4 3.70None
Crop19 34 of 4 5.60Up
Midgut4 00 of 4 1.20None
Tubule4 11 of 4 1.30None
Hindgut34 14 of 4 9.80Up
Heart1 00 of 4 0.49None
Fat body4 40 of 4 1.22None
Ovary1 00 of 4 0.50None
Testis15 14 of 4 4.50Up
Male accessory glands4 20 of 4 1.10None
Virgin spermatheca0 00 of 4 0.24Down
Mated spermatheca2 00 of 4 0.72None
Adult carcass5 10 of 4 1.40None
Larval CNS3 12 of 4 0.97None
Larval Salivary gland3 10 of 4 0.97None
Larval midgut3 00 of 4 1.07None
Larval tubule2 00 of 4 0.60None
Larval hindgut12 14 of 4 3.67Up
Larval fat body4 00 of 4 1.20None
Larval trachea4 20 of 4 1.17None
Larval carcass5 10 of 4 1.49None
S2 cells (growing)2 00 of 4 0.64None
Whole fly3 01 of 4

Looking for FBgn0030590. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime