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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030599 through 18771 annotations produced 1 hits



(CG9030):

Annotation Number : CG9030
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030599
Gbrowse : chrX:14845696-14849133 (-) // 100.0 //
Probeset : 1627028_at
Accessions : protein= NP_727815;, nucleotide= NM_167422;
Interpro : 0030170 // pyridoxal phosphate binding // inferred from electronic annotation
FlyMine data for FBgn0030599.
BDGP gene expression has embryonic in situ data for CG9030: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030599 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 02 of 4 0.20Down
Head6 ± 11 of 4 0.20Down
Eye2 ± 00 of 4 0.09Down
Thoracicoabdominal ganglion3 ± 11 of 4 0.10Down
Salivary gland16 ± 20 of 4 0.61Down
Crop8 ± 14 of 4 0.30Down
Midgut5 ± 11 of 4 0.20Down
Tubule7 ± 01 of 4 0.30Down
Hindgut6 ± 13 of 4 0.20Down
Heart4 ± 12 of 4 0.15Down
Fat body14 ± 33 of 4 0.51Down
Ovary2 ± 00 of 4 0.10Down
Testis572 ± 104 of 420.80Up
Male accessory glands10 ± 32 of 4 0.40Down
Virgin spermatheca13 ± 13 of 4 0.48Down
Mated spermatheca11 ± 13 of 4 0.43Down
Adult carcass17 ± 34 of 4 0.60Down
Larval CNS5 ± 23 of 4 0.20Down
Larval Salivary gland8 ± 01 of 4 0.30Down
Larval midgut7 ± 03 of 4 0.26Down
Larval tubule7 ± 13 of 4 0.30Down
Larval hindgut5 ± 12 of 4 0.18Down
Larval fat body73 ± 374 of 4 2.70None
Larval trachea5 ± 42 of 4 0.20Down
Larval carcass5 ± 11 of 4 0.21Down
S2 cells (growing)4 ± 01 of 4 0.16Down
Whole fly27 ± 24 of 4

Looking for FBgn0030599. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime