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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030600 through 18771 annotations produced 1 hits



highwire (hiw):

Annotation Number : CG32592
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030600
Gbrowse : chrX:14904720-14957440 (-) // 99.97 //
Probeset : 1632637_at
Accessions : protein= NP_511159;, nucleotide= NM_078604;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005680 // anaphase-promoting complex // inferred from ele
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005515 // protein b
FlyMine data for FBgn0030600.
BioGrid reports that CG32592 interacts with CG6992 CG1945 .
TRiP has 1 RNAi stocks for FBgn0030600 available for purchase.
VDRC has 4 RNAi stocks for FBgn0030600 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain322 124 of 411.60Up
Head67 44 of 4 2.40Up
Eye70 64 of 4 2.55Up
Thoracicoabdominal ganglion301 134 of 410.90Up
Salivary gland13 11 of 4 0.48Down
Crop10 23 of 4 0.40Down
Midgut127 44 of 4 4.60Up
Tubule42 54 of 4 1.50Up
Hindgut33 14 of 4 1.20Up
Heart5 00 of 4 0.20Down
Fat body9 41 of 4 0.35Down
Ovary7 04 of 4 0.30Down
Testis50 34 of 4 1.80Up
Male accessory glands9 22 of 4 0.30Down
Virgin spermatheca10 01 of 4 0.37Down
Mated spermatheca7 10 of 4 0.27Down
Adult carcass13 12 of 4 0.50Down
Larval CNS142 64 of 4 5.13Up
Larval Salivary gland13 22 of 4 0.47Down
Larval midgut87 34 of 4 3.15Up
Larval tubule30 10 of 4 1.10None
Larval hindgut28 34 of 4 1.03None
Larval fat body16 14 of 4 0.60Down
Larval trachea5 13 of 4 0.20Down
Larval carcass9 22 of 4 0.35Down
S2 cells (growing)74 04 of 4 2.68Up
Whole fly27 04 of 4

Looking for FBgn0030600. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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