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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030605 through 18771 annotations produced 1 hits



NADH ubiquinone oxidoreductase B18 (CG5548):

Annotation Number : CG5548
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030605
Gbrowse : chrX:14957944-14958597 (+) // 100.0 //
Probeset : 1637018_at
Accessions : protein= NP_572993;, nucleotide= NM_132765;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred fr
Interpro : 0005739 // mitochondrion // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I
FlyMine data for FBgn0030605.
BioGrid reports that CG5548 interacts with CG5711 .
TRiP has 1 RNAi stocks for FBgn0030605 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030605 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain567 144 of 4 0.90None
Head693 414 of 4 1.20None
Eye727 384 of 4 1.22Up
Thoracicoabdominal ganglion658 244 of 4 1.10None
Salivary gland925 334 of 4 1.55Up
Crop724 274 of 4 1.20Up
Midgut723 274 of 4 1.20Up
Tubule491 34 of 4 0.80Down
Hindgut1116 204 of 4 1.90Up
Heart846 184 of 4 1.42Up
Fat body835 774 of 4 1.40Up
Ovary391 134 of 4 0.70Down
Testis244 44 of 4 0.40Down
Male accessory glands520 124 of 4 0.90Down
Virgin spermatheca572 424 of 4 0.96None
Mated spermatheca506 204 of 4 0.85Down
Adult carcass1328 734 of 4 2.20Up
Larval CNS491 514 of 4 0.82Down
Larval Salivary gland783 544 of 4 1.31Up
Larval midgut526 344 of 4 0.88None
Larval tubule585 344 of 4 1.00None
Larval hindgut924 344 of 4 1.54Up
Larval fat body383 354 of 4 0.60Down
Larval trachea565 384 of 4 0.95None
Larval carcass889 474 of 4 1.49Up
S2 cells (growing)503 244 of 4 0.84Down
Whole fly598 174 of 4

Looking for FBgn0030605. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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