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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030611 through 18771 annotations produced 1 hits



(CG15027):

Annotation Number : CG15027
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030611
Gbrowse : chrX:14979193-14979840 (-) // 100.0 //
Probeset : 1623724_at
Accessions : protein= NP_572999;, nucleotide= NM_132771;
FlyMine data for FBgn0030611.
VDRC has 2 RNAi stocks for FBgn0030611 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain71 ± 14 of 4 0.60Down
Head93 ± 54 of 4 0.80None
Eye95 ± 44 of 4 0.81None
Thoracicoabdominal ganglion63 ± 44 of 4 0.50Down
Salivary gland148 ± 94 of 4 1.27None
Crop120 ± 74 of 4 1.00None
Midgut113 ± 74 of 4 1.00None
Tubule84 ± 94 of 4 0.70Down
Hindgut96 ± 44 of 4 0.80None
Heart120 ± 64 of 4 1.02None
Fat body141 ± 204 of 4 1.21None
Ovary171 ± 54 of 4 1.50Up
Testis29 ± 14 of 4 0.30Down
Male accessory glands197 ± 144 of 4 1.70Up
Virgin spermatheca149 ± 104 of 4 1.27None
Mated spermatheca200 ± 94 of 4 1.71Up
Adult carcass96 ± 54 of 4 0.80None
Larval CNS138 ± 34 of 4 1.18None
Larval Salivary gland153 ± 84 of 4 1.31Up
Larval midgut67 ± 34 of 4 0.58Down
Larval tubule64 ± 14 of 4 0.50Down
Larval hindgut90 ± 64 of 4 0.77None
Larval fat body55 ± 24 of 4 0.50Down
Larval trachea183 ± 284 of 4 1.56Up
Larval carcass123 ± 204 of 4 1.05None
S2 cells (growing)75 ± 24 of 4 0.65Down
Whole fly117 ± 84 of 4

Looking for FBgn0030611. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime