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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030613 through 18771 annotations produced 1 hits



rab3-GEF (rab3-GEF):

Annotation Number : CG5627
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030613
Gbrowse : chrX:14987285-15007795 (+) // 100.0 //
Probeset : 1625981_at
Accessions : protein= NP_001096983; /// NP_573001;, nucleotide= NM_001103513; /// NM_132773;
Pathway : 0008021 // synaptic vesicle // non-traceable author statement /// 0016020 // membrane // inferred from electronic annota
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein bind
FlyMine data for FBgn0030613.
Homophila reports that CG5627 is a close match (1e-13) to human gene CMT4B2;MTMR13;SBF2 (NP_112224), a gene associated with Charcot-Marie-Tooth disease, type 4B2, 604563 (3).
TRiP has 1 RNAi stocks for FBgn0030613 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030613 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1005 474 of 430.10Up
Head149 104 of 4 4.50Up
Eye173 104 of 4 5.20Up
Thoracicoabdominal ganglion890 384 of 426.60Up
Salivary gland25 32 of 4 0.75None
Crop11 21 of 4 0.40Down
Midgut21 14 of 4 0.60Down
Tubule19 33 of 4 0.60Down
Hindgut23 24 of 4 0.70Down
Heart14 01 of 4 0.42Down
Fat body30 104 of 4 0.91None
Ovary11 14 of 4 0.40Down
Testis1 00 of 4 0.00Down
Male accessory glands11 00 of 4 0.30Down
Virgin spermatheca24 24 of 4 0.72Down
Mated spermatheca22 44 of 4 0.66None
Adult carcass24 43 of 4 0.70None
Larval CNS236 214 of 4 7.08Up
Larval Salivary gland13 22 of 4 0.40Down
Larval midgut8 11 of 4 0.24Down
Larval tubule10 12 of 4 0.30Down
Larval hindgut15 24 of 4 0.46Down
Larval fat body70 54 of 4 2.10Up
Larval trachea10 42 of 4 0.32Down
Larval carcass10 13 of 4 0.31Down
S2 cells (growing)5 11 of 4 0.15Down
Whole fly33 24 of 4

Looking for FBgn0030613. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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