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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030614 through 18771 annotations produced 1 hits



(CG9072):

Annotation Number : CG9072
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030614
Gbrowse : chrX:14989521-14990066 (-) // 100.0 //
Probeset : 1623482_at
Accessions : protein= NP_573002;, nucleotide= NM_132774;
Pathway : 0005874 // microtubule // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred fro
FlyMine data for FBgn0030614.
VDRC has 3 RNAi stocks for FBgn0030614 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head6 ± 00 of 4 0.10Down
Eye2 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion8 ± 20 of 4 0.10Down
Salivary gland9 ± 70 of 4 0.16Down
Crop4 ± 00 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule5 ± 10 of 4 0.10Down
Hindgut5 ± 10 of 4 0.10Down
Heart3 ± 11 of 4 0.06Down
Fat body6 ± 20 of 4 0.12Down
Ovary2 ± 00 of 4 0.00Down
Testis740 ± 154 of 412.70Up
Male accessory glands5 ± 30 of 4 0.10Down
Virgin spermatheca7 ± 20 of 4 0.12Down
Mated spermatheca11 ± 30 of 4 0.20Down
Adult carcass3 ± 00 of 4 0.10Down
Larval CNS3 ± 10 of 4 0.05Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut4 ± 10 of 4 0.07Down
Larval tubule32 ± 13 of 4 0.60Down
Larval hindgut3 ± 10 of 4 0.06Down
Larval fat body52 ± 321 of 4 0.90None
Larval trachea4 ± 40 of 4 0.08Down
Larval carcass0 ± 00 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly58 ± 24 of 4

Looking for FBgn0030614. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime