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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030615 through 18771 annotations produced 1 hits



Cyp4s3 (Cyp4s3):

Annotation Number : CG9081
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030615
Gbrowse : chrX:15007334-15010572 (-) // 100.0 //
Probeset : 1636688_at
Accessions : protein= NP_573003;, nucleotide= NM_132775;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0030615.
Homophila reports that CG9081 is a close match (3e-13) to human gene CA21H;CYP21;CYP21A2 (NP_000491), a gene associated with Adrenal hyperplasia, congenital, due to 21-hydroxylase deficiency (3);Hyperandrogenism, nonclassic type, due to 21-hydroxylase deficiency (3).
VDRC has 2 RNAi stocks for FBgn0030615 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 ± 24 of 4 2.10Up
Head22 ± 14 of 4 0.80Down
Eye26 ± 54 of 4 0.93None
Thoracicoabdominal ganglion65 ± 34 of 4 2.30Up
Salivary gland2 ± 10 of 4 0.09Down
Crop5 ± 10 of 4 0.20Down
Midgut52 ± 74 of 4 1.80Up
Tubule100 ± 314 of 4 3.50Up
Hindgut112 ± 24 of 4 3.90Up
Heart27 ± 34 of 4 0.95None
Fat body65 ± 104 of 4 2.27Up
Ovary29 ± 24 of 4 1.00None
Testis3 ± 00 of 4 0.10Down
Male accessory glands5 ± 10 of 4 0.20Down
Virgin spermatheca43 ± 44 of 4 1.50Up
Mated spermatheca46 ± 64 of 4 1.60None
Adult carcass17 ± 02 of 4 0.60Down
Larval CNS10 ± 14 of 4 0.38Down
Larval Salivary gland30 ± 24 of 4 1.07None
Larval midgut5 ± 20 of 4 0.19Down
Larval tubule7 ± 21 of 4 0.30Down
Larval hindgut33 ± 54 of 4 1.18None
Larval fat body202 ± 324 of 4 7.00Up
Larval trachea6 ± 41 of 4 0.24Down
Larval carcass10 ± 22 of 4 0.38Down
S2 cells (growing)1 ± 00 of 4 0.05Down
Whole fly28 ± 14 of 4

Looking for FBgn0030615. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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