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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030617 through 18771 annotations produced 1 hits



(CG9095):

Annotation Number : CG9095
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030617
Gbrowse : chrX:15033961-15057255 (-) // 100.0 //
Probeset : 1631280_at
Accessions : protein= NP_001096984; /// NP_573006;, nucleotide= NM_001103514; /// NM_132778;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annot
FlyMine data for FBgn0030617.
Homophila reports that CG9095 is a close match (8e-11) to human gene ARMD4;CFH;HF1;HUS (NP_001014975), a gene associated with Basal laminar drusen, 126700 (3);Complement factor H deficiency, 609814 (3);Factor H and factor H-like 1 , 609814 (3);Hemolytic-uremic syndrome, 235400 (3);Membranoproliferative glomerulonephritis with CFH deficiency, 609814 (3);{Macular degeneration, age-related, 4}, 610698 (3);{Myocardial infarction, susceptibility to} (2).
VDRC has 3 RNAi stocks for FBgn0030617 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 34 of 4 0.70None
Head76 14 of 4 2.80Up
Eye22 24 of 4 0.82None
Thoracicoabdominal ganglion6 00 of 4 0.20Down
Salivary gland66 74 of 4 2.41Up
Crop40 34 of 4 1.50None
Midgut7 21 of 4 0.30Down
Tubule8 01 of 4 0.30Down
Hindgut118 24 of 4 4.30Up
Heart6 12 of 4 0.25Down
Fat body16 54 of 4 0.61None
Ovary4 10 of 4 0.10Down
Testis5 01 of 4 0.20Down
Male accessory glands27 33 of 4 1.00None
Virgin spermatheca18 14 of 4 0.66None
Mated spermatheca18 44 of 4 0.68None
Adult carcass57 44 of 4 2.10Up
Larval CNS18 44 of 4 0.68None
Larval Salivary gland36 54 of 4 1.31None
Larval midgut11 32 of 4 0.42Down
Larval tubule4 20 of 4 0.10Down
Larval hindgut196 224 of 4 7.15Up
Larval fat body4 10 of 4 0.10Down
Larval trachea922 684 of 433.53Up
Larval carcass92 114 of 4 3.37Up
S2 cells (growing)1 00 of 4 0.07Down
Whole fly27 54 of 4

Looking for FBgn0030617. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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