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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030624 through 18771 annotations produced 1 hits


(CG9106):

Annotation Number : CG9106
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030624
Gbrowse : chrX:15165068-15166438 (-) // 100.0 //
Probeset : 1627155_s_at
Accessions : protein= NP_573013; /// NP_727838;, nucleotide= NM_132785; /// NM_167433;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030624.
BDGP gene expression has embryonic in situ data for CG9106: 4 pix of staining in 1 body parts.
BioGrid reports that CG9106 interacts with CG9283 CG9983 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 10 of 4 0.00Down
Salivary gland14 ± 61 of 4 0.18Down
Crop4 ± 20 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule6 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body25 ± 191 of 4 0.31Down
Ovary0 ± 00 of 4 0.00Down
Testis1070 ± 354 of 413.20Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca34 ± 34 of 4 0.42Down
Mated spermatheca39 ± 133 of 4 0.49Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS19 ± 123 of 4 0.24Down
Larval Salivary gland4 ± 20 of 4 0.05Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.03Down
Larval fat body119 ± 733 of 4 1.50None
Larval trachea2 ± 30 of 4 0.04Down
Larval carcass6 ± 00 of 4 0.07Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly81 ± 64 of 4

Looking for FBgn0030624. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime