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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030625 through 18771 annotations produced 1 hits



(CG5877):

Annotation Number : CG5877
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030625
Gbrowse : chrX:15187065-15190836 (+) // 100.0 //
Probeset : 1638618_a_at
Accessions : protein= NP_573014; /// NP_727839;, nucleotide= NM_132786; /// NM_167434;
Pathway : via spliceosome // inferred by curator"
Interpro : 0071013 // catalytic step 2 spliceosome // inferred from direct assay
FlyMine data for FBgn0030625.
VDRC has 1 RNAi stocks for FBgn0030625 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 ± 24 of 4 0.70Down
Head30 ± 44 of 4 0.50Down
Eye30 ± 14 of 4 0.48Down
Thoracicoabdominal ganglion41 ± 34 of 4 0.60Down
Salivary gland39 ± 34 of 4 0.61Down
Crop48 ± 04 of 4 0.70Down
Midgut28 ± 14 of 4 0.40Down
Tubule26 ± 34 of 4 0.40Down
Hindgut45 ± 14 of 4 0.70Down
Heart18 ± 14 of 4 0.29Down
Fat body28 ± 44 of 4 0.44Down
Ovary92 ± 34 of 4 1.40Up
Testis377 ± 94 of 4 5.80Up
Male accessory glands30 ± 14 of 4 0.50Down
Virgin spermatheca31 ± 14 of 4 0.49Down
Mated spermatheca38 ± 14 of 4 0.59Down
Adult carcass33 ± 34 of 4 0.50Down
Larval CNS57 ± 34 of 4 0.89None
Larval Salivary gland48 ± 54 of 4 0.75None
Larval midgut28 ± 34 of 4 0.43Down
Larval tubule38 ± 24 of 4 0.60Down
Larval hindgut35 ± 14 of 4 0.54Down
Larval fat body66 ± 274 of 4 1.00None
Larval trachea31 ± 94 of 4 0.48Down
Larval carcass35 ± 24 of 4 0.55Down
S2 cells (growing)50 ± 24 of 4 0.78Down
Whole fly64 ± 34 of 4

Looking for FBgn0030625. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime