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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030628 through 18771 annotations produced 1 hits


Annotation Number : CG9114
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030628
Gbrowse : chrX:15224411-15227473 (-) // 100.0 //
Probeset : 1634472_at
Accessions : protein= NP_573016;, nucleotide= NM_132788;
FlyMine data for FBgn0030628.
BDGP gene expression has embryonic in situ data for CG9114: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0030628 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20None
Head4 10 of 4 1.00None
Eye7 12 of 4 1.51None
Thoracicoabdominal ganglion4 10 of 4 0.80None
Salivary gland8 10 of 4 1.62None
Crop2 00 of 4 0.50None
Midgut3 10 of 4 0.70None
Tubule4 00 of 4 0.90None
Hindgut2 00 of 4 0.60None
Heart4 11 of 4 0.98None
Fat body6 20 of 4 1.35None
Ovary8 14 of 4 1.70None
Testis0 00 of 4 0.10None
Male accessory glands21 31 of 4 4.40Up
Virgin spermatheca5 10 of 4 1.01None
Mated spermatheca4 11 of 4 0.86None
Adult carcass4 10 of 4 0.80None
Larval CNS3 11 of 4 0.62None
Larval Salivary gland4 12 of 4 0.95None
Larval midgut5 20 of 4 1.03None
Larval tubule3 20 of 4 0.80None
Larval hindgut2 00 of 4 0.47None
Larval fat body2 00 of 4 0.50None
Larval trachea3 30 of 4 0.74None
Larval carcass3 11 of 4 0.80None
S2 cells (growing)1 00 of 4 0.29None
Whole fly4 11 of 4

Looking for FBgn0030628. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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