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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030629 through 18771 annotations produced 1 hits



/// /// GA11717 (CG12608 /// CG9123 /// DpseGA11717):

Annotation Number : CG12608
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030629 /// FBgn0030630
Gbrowse : chrX:15236886-15238647 (-) // 100.0 // /// chrX:15234402-15236136 (-) // 94.65 //
Probeset : 1629288_s_at
Accessions : protein= NP_573018; /// NP_573019;, nucleotide= NM_132790; /// NM_132791;
FlyMine data for FBgn0030629 /// FBgn0030630.
BioGrid reports that CG12608 interacts with CG8841 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain204 104 of 4 2.10Up
Head72 64 of 4 0.70Down
Eye108 64 of 4 1.10None
Thoracicoabdominal ganglion176 44 of 4 1.80Up
Salivary gland64 44 of 4 0.65Down
Crop65 44 of 4 0.70Down
Midgut42 24 of 4 0.40Down
Tubule56 134 of 4 0.60Down
Hindgut44 14 of 4 0.50Down
Heart51 44 of 4 0.52Down
Fat body72 74 of 4 0.73Down
Ovary179 54 of 4 1.80Up
Testis168 94 of 4 1.70Up
Male accessory glands209 64 of 4 2.10Up
Virgin spermatheca95 44 of 4 0.96None
Mated spermatheca123 74 of 4 1.25Up
Adult carcass46 34 of 4 0.50Down
Larval CNS189 214 of 4 1.91Up
Larval Salivary gland95 104 of 4 0.97None
Larval midgut35 34 of 4 0.36Down
Larval tubule46 24 of 4 0.50Down
Larval hindgut54 24 of 4 0.55Down
Larval fat body65 84 of 4 0.70Down
Larval trachea110 144 of 4 1.12None
Larval carcass53 104 of 4 0.54Down
S2 cells (growing)181 34 of 4 1.84Up
Whole fly98 34 of 4

Looking for FBgn0030629. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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