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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030631 through 18771 annotations produced 1 hits



(CG6227):

Annotation Number : CG6227
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030631
Gbrowse : chrX:15239151-15244054 (+) // 100.0 //
Probeset : 1638962_at
Accessions : protein= NP_573020;, nucleotide= NM_132792;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity"
FlyMine data for FBgn0030631.
VDRC has 3 RNAi stocks for FBgn0030631 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain71 ± 14 of 4 1.10None
Head36 ± 24 of 4 0.60Down
Eye39 ± 24 of 4 0.61Down
Thoracicoabdominal ganglion48 ± 24 of 4 0.70Down
Salivary gland30 ± 44 of 4 0.46Down
Crop39 ± 14 of 4 0.60Down
Midgut37 ± 14 of 4 0.60Down
Tubule39 ± 34 of 4 0.60Down
Hindgut37 ± 14 of 4 0.60Down
Heart43 ± 24 of 4 0.67Down
Fat body43 ± 34 of 4 0.66Down
Ovary148 ± 24 of 4 2.30Up
Testis16 ± 14 of 4 0.20Down
Male accessory glands73 ± 84 of 4 1.10None
Virgin spermatheca48 ± 14 of 4 0.74Down
Mated spermatheca50 ± 24 of 4 0.77Down
Adult carcass29 ± 22 of 4 0.50Down
Larval CNS155 ± 124 of 4 2.38Up
Larval Salivary gland60 ± 14 of 4 0.92None
Larval midgut37 ± 14 of 4 0.57Down
Larval tubule36 ± 04 of 4 0.60Down
Larval hindgut49 ± 04 of 4 0.76Down
Larval fat body20 ± 34 of 4 0.30Down
Larval trachea78 ± 74 of 4 1.20None
Larval carcass61 ± 64 of 4 0.94None
S2 cells (growing)92 ± 24 of 4 1.42Up
Whole fly65 ± 34 of 4

Looking for FBgn0030631. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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