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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030638 through 18771 annotations produced 1 hits


Annotation Number : CG11655
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030638
Gbrowse : chrX:15347517-15349588 (+) // 100.0 //
Probeset : 1625902_at
Accessions : protein= NP_573024;, nucleotide= NM_132796;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0008508 // bile acid:sodium symporter activity // inferred from sequence or structural similarity /// 0008508 // bile ac
FlyMine data for FBgn0030638.
BDGP gene expression has embryonic in situ data for CG11655: 6 pix of staining in 1 body parts.
Homophila reports that CG11655 is a close match (7e-16) to human gene SLC10A2;NTCP2 (NP_000443), a gene associated with Bile acid malabsorption, primary (3).
VDRC has 1 RNAi stocks for FBgn0030638 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 24 of 4 0.50Down
Head112 54 of 4 1.10None
Eye52 44 of 4 0.51Down
Thoracicoabdominal ganglion59 64 of 4 0.60Down
Salivary gland151 54 of 4 1.48Up
Crop203 114 of 4 2.00Up
Midgut126 44 of 4 1.20Up
Tubule290 194 of 4 2.80Up
Hindgut147 44 of 4 1.40Up
Heart99 64 of 4 0.97None
Fat body158 84 of 4 1.55Up
Ovary157 44 of 4 1.50Up
Testis22 14 of 4 0.20Down
Male accessory glands114 64 of 4 1.10None
Virgin spermatheca287 174 of 4 2.81Up
Mated spermatheca230 44 of 4 2.25Up
Adult carcass175 104 of 4 1.70Up
Larval CNS37 84 of 4 0.37Down
Larval Salivary gland64 74 of 4 0.63Down
Larval midgut69 54 of 4 0.68Down
Larval tubule135 64 of 4 1.30Up
Larval hindgut84 34 of 4 0.83Down
Larval fat body66 64 of 4 0.60Down
Larval trachea141 84 of 4 1.38Up
Larval carcass72 44 of 4 0.71Down
S2 cells (growing)132 24 of 4 1.29Up
Whole fly102 44 of 4

Looking for FBgn0030638. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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