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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030640 through 18771 annotations produced 3 hits



/// (CG6294 /// CG6299):

Annotation Number : CG6299
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030640 /// FBgn0030641
Gbrowse : chrX:15356744-15360844 (+) // 100.0 //
Probeset : 1630187_a_at
Accessions : protein= NP_727854; /// NP_788905; /// NP_788906;, nucleotide= NM_167445; /// NM_176732; /// NM_176733;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0017089 // glycolipid transporter activity // inferred from electronic annotation /// 0051861 // glycolipid binding // i
FlyMine data for FBgn0030640 /// FBgn0030641.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain189 44 of 4 1.10None
Head182 34 of 4 1.00None
Eye162 64 of 4 0.92None
Thoracicoabdominal ganglion262 94 of 4 1.50Up
Salivary gland165 54 of 4 0.94None
Crop315 64 of 4 1.80Up
Midgut941 214 of 4 5.30Up
Tubule48 14 of 4 0.30Down
Hindgut248 64 of 4 1.40Up
Heart308 184 of 4 1.74Up
Fat body357 214 of 4 2.02Up
Ovary69 14 of 4 0.40Down
Testis39 04 of 4 0.20Down
Male accessory glands700 304 of 4 4.00Up
Virgin spermatheca514 134 of 4 2.90Up
Mated spermatheca481 84 of 4 2.72Up
Adult carcass242 124 of 4 1.40Up
Larval CNS154 54 of 4 0.87None
Larval Salivary gland262 84 of 4 1.48Up
Larval midgut833 1084 of 4 4.70Up
Larval tubule74 64 of 4 0.40Down
Larval hindgut393 94 of 4 2.22Up
Larval fat body57 54 of 4 0.30Down
Larval trachea278 284 of 4 1.57Up
Larval carcass170 54 of 4 0.96None
S2 cells (growing)194 44 of 4 1.10None
Whole fly177 94 of 4



/// (CG6294 /// CG6299):

Annotation Number : CG6294
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030640 /// FBgn0030641
Gbrowse : chrX:15356747-15358441 (+) // 100.0 //
Probeset : 1624052_at
Accessions : protein= NP_727854; /// NP_788905; /// NP_788906;, nucleotide= NM_167445; /// NM_176732; /// NM_176733;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0017089 // glycolipid transporter activity // inferred from electronic annotation /// 0051861 // glycolipid binding // i
FlyMine data for FBgn0030640 /// FBgn0030641.
BioGrid reports that CG6294 interacts with CG9902 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 14 of 4 2.70Up
Head20 24 of 4 1.10None
Eye5 11 of 4 0.31Down
Thoracicoabdominal ganglion48 44 of 4 2.70Up
Salivary gland25 50 of 4 1.42None
Crop25 34 of 4 1.40None
Midgut14 13 of 4 0.80None
Tubule4 00 of 4 0.30Down
Hindgut23 24 of 4 1.30None
Heart5 12 of 4 0.29Down
Fat body13 42 of 4 0.74None
Ovary23 04 of 4 1.30Up
Testis9 04 of 4 0.50Down
Male accessory glands26 34 of 4 1.50None
Virgin spermatheca4 10 of 4 0.23Down
Mated spermatheca6 10 of 4 0.36Down
Adult carcass29 14 of 4 1.60Up
Larval CNS23 34 of 4 1.31Up
Larval Salivary gland33 34 of 4 1.82Up
Larval midgut9 03 of 4 0.53Down
Larval tubule15 34 of 4 0.90None
Larval hindgut15 14 of 4 0.85None
Larval fat body23 34 of 4 1.30None
Larval trachea11 24 of 4 0.62Down
Larval carcass16 34 of 4 0.89None
S2 cells (growing)33 04 of 4 1.84Up
Whole fly18 14 of 4



/// (CG6294 /// CG6299):

Annotation Number : CG6294
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030640 /// FBgn0030641
Gbrowse : chrX:15356747-15358441 (+) // 100.0 //
Probeset : 1624443_s_at
Accessions : protein= NP_727854; /// NP_788905; /// NP_788906;, nucleotide= NM_167445; /// NM_176732; /// NM_176733;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0017089 // glycolipid transporter activity // inferred from electronic annotation /// 0051861 // glycolipid binding // i
FlyMine data for FBgn0030640 /// FBgn0030641.
BioGrid reports that CG6294 interacts with CG9902 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 34 of 4 2.30Up
Head35 24 of 4 1.20None
Eye18 04 of 4 0.62None
Thoracicoabdominal ganglion85 54 of 4 3.00Up
Salivary gland51 54 of 4 1.76Up
Crop55 24 of 4 1.90Up
Midgut31 04 of 4 1.10None
Tubule15 13 of 4 0.50Down
Hindgut47 23 of 4 1.60Up
Heart19 14 of 4 0.67None
Fat body19 63 of 4 0.69None
Ovary32 04 of 4 1.10None
Testis21 04 of 4 0.70None
Male accessory glands55 24 of 4 1.90Up
Virgin spermatheca13 03 of 4 0.45Down
Mated spermatheca13 12 of 4 0.45Down
Adult carcass40 64 of 4 1.40None
Larval CNS43 34 of 4 1.49Up
Larval Salivary gland59 54 of 4 2.05Up
Larval midgut31 13 of 4 1.08None
Larval tubule30 14 of 4 1.10None
Larval hindgut42 34 of 4 1.48Up
Larval fat body29 24 of 4 1.00None
Larval trachea38 94 of 4 1.33None
Larval carcass39 24 of 4 1.37None
S2 cells (growing)58 44 of 4 2.00Up
Whole fly29 44 of 4

Looking for FBgn0030640. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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