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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030642 through 18771 annotations produced 1 hits



(CG15642):

Annotation Number : CG15642
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030642
Gbrowse : chrX:15360865-15361502 (-) // 100.0 //
Probeset : 1628586_at
Accessions : protein= NP_573028;, nucleotide= NM_132800;
FlyMine data for FBgn0030642.
VDRC has 3 RNAi stocks for FBgn0030642 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 34 of 4 2.80Up
Head14 ± 24 of 4 1.20None
Eye8 ± 11 of 4 0.74None
Thoracicoabdominal ganglion29 ± 34 of 4 2.50Up
Salivary gland11 ± 60 of 4 0.95None
Crop7 ± 20 of 4 0.60None
Midgut12 ± 00 of 4 1.10None
Tubule6 ± 10 of 4 0.60Down
Hindgut7 ± 11 of 4 0.60Down
Heart6 ± 10 of 4 0.50Down
Fat body13 ± 42 of 4 1.07None
Ovary3 ± 10 of 4 0.30Down
Testis22 ± 14 of 4 1.90Up
Male accessory glands148 ± 64 of 412.20Up
Virgin spermatheca8 ± 11 of 4 0.66None
Mated spermatheca7 ± 11 of 4 0.65None
Adult carcass14 ± 12 of 4 1.20None
Larval CNS24 ± 24 of 4 2.00Up
Larval Salivary gland1 ± 00 of 4 0.14Down
Larval midgut8 ± 00 of 4 0.72None
Larval tubule4 ± 10 of 4 0.40Down
Larval hindgut8 ± 10 of 4 0.70None
Larval fat body5 ± 10 of 4 0.50Down
Larval trachea4 ± 20 of 4 0.37Down
Larval carcass11 ± 21 of 4 0.97None
S2 cells (growing)7 ± 10 of 4 0.58None
Whole fly12 ± 10 of 4

Looking for FBgn0030642. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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