Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030643 through 18771 annotations produced 1 hits



(CG15641):

Annotation Number : CG15641
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030643
Gbrowse : chrX:15361938-15362307 (+) // 100.0 //
Probeset : 1631290_at
Accessions : protein= NP_573029;, nucleotide= NM_132801;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0030643.
VDRC has 3 RNAi stocks for FBgn0030643 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 14 of 4 0.20Down
Head14 ± 02 of 4 0.20Down
Eye6 ± 10 of 4 0.09Down
Thoracicoabdominal ganglion12 ± 13 of 4 0.20Down
Salivary gland23 ± 71 of 4 0.35Down
Crop18 ± 33 of 4 0.30Down
Midgut23 ± 31 of 4 0.40Down
Tubule13 ± 03 of 4 0.20Down
Hindgut12 ± 03 of 4 0.20Down
Heart6 ± 11 of 4 0.10Down
Fat body20 ± 34 of 4 0.31Down
Ovary11 ± 03 of 4 0.20Down
Testis8 ± 12 of 4 0.10Down
Male accessory glands3935 ± 2134 of 459.20Up
Virgin spermatheca13 ± 12 of 4 0.20Down
Mated spermatheca10 ± 11 of 4 0.16Down
Adult carcass32 ± 23 of 4 0.50Down
Larval CNS7 ± 22 of 4 0.11Down
Larval Salivary gland12 ± 41 of 4 0.19Down
Larval midgut16 ± 23 of 4 0.24Down
Larval tubule12 ± 21 of 4 0.20Down
Larval hindgut13 ± 03 of 4 0.21Down
Larval fat body12 ± 21 of 4 0.20Down
Larval trachea6 ± 40 of 4 0.09Down
Larval carcass15 ± 10 of 4 0.23Down
S2 cells (growing)13 ± 14 of 4 0.21Down
Whole fly66 ± 64 of 4

Looking for FBgn0030643. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime