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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030647 through 18771 annotations produced 1 hits



(CG6324):

Annotation Number : CG6324
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030647
Gbrowse : chrX:15371974-15375050 (+) // 100.0 //
Probeset : 1637953_at
Accessions : protein= NP_573033;, nucleotide= NM_132805;
FlyMine data for FBgn0030647.
BioGrid reports that CG6324 interacts with CG8426 .
VDRC has 1 RNAi stocks for FBgn0030647 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.80None
Head3 ± 00 of 4 1.50None
Eye1 ± 10 of 4 0.78None
Thoracicoabdominal ganglion2 ± 00 of 4 1.20None
Salivary gland1 ± 00 of 4 0.74None
Crop3 ± 10 of 4 1.30None
Midgut4 ± 10 of 4 1.90None
Tubule1 ± 00 of 4 0.80None
Hindgut2 ± 10 of 4 1.10None
Heart1 ± 00 of 4 0.52None
Fat body1 ± 10 of 4 0.57None
Ovary1 ± 00 of 4 0.60None
Testis18 ± 14 of 4 7.80Up
Male accessory glands3 ± 10 of 4 1.40None
Virgin spermatheca2 ± 00 of 4 1.11None
Mated spermatheca2 ± 00 of 4 1.02None
Adult carcass4 ± 10 of 4 1.90None
Larval CNS0 ± 00 of 4 0.21None
Larval Salivary gland0 ± 00 of 4 0.17None
Larval midgut2 ± 00 of 4 1.22None
Larval tubule1 ± 00 of 4 0.80None
Larval hindgut0 ± 00 of 4 0.38None
Larval fat body6 ± 20 of 4 2.70None
Larval trachea1 ± 10 of 4 0.78None
Larval carcass0 ± 00 of 4 0.17None
S2 cells (growing)1 ± 00 of 4 0.56None
Whole fly2 ± 10 of 4

Looking for FBgn0030647. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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