FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030648 through 18771 annotations produced 4 hits

(CG6340):

Annotation Number : CG6340
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030648
Gbrowse : chrX:15376409-15378413 (+) // 100.0 //
Probeset : 1634931_at
Accessions : protein= NP_573034; /// NP_727861; /// NP_727862;, nucleotide= NM_132806; /// NM_167447; /// NM_167448;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030648.
BDGP gene expression has embryonic in situ data for CG6340: 10 pix of staining in 11 body parts.
BioGrid reports that CG6340 interacts with CG6843 .
VDRC has 3 RNAi stocks for FBgn0030648 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	16 ± 0	4 of 4	4.30	Up
Head	5 ± 1	0 of 4	1.60	None
Eye	22 ± 1	4 of 4	5.96	Up
Thoracicoabdominal ganglion	12 ± 2	3 of 4	3.40	Up
Salivary gland	14 ± 2	2 of 4	3.93	Up
Crop	9 ± 0	1 of 4	2.40	Up
Midgut	9 ± 1	3 of 4	2.40	Up
Tubule	7 ± 1	1 of 4	2.10	Up
Hindgut	11 ± 2	3 of 4	3.10	Up
Heart	24 ± 3	4 of 4	6.48	Up
Fat body	10 ± 3	3 of 4	2.74	Up
Ovary	5 ± 1	2 of 4	1.40	None
Testis	6 ± 1	2 of 4	1.70	None
Male accessory glands	17 ± 2	3 of 4	4.60	Up
Virgin spermatheca	17 ± 0	4 of 4	4.59	Up
Mated spermatheca	20 ± 2	4 of 4	5.38	Up
Adult carcass	11 ± 3	1 of 4	3.00	None
Larval CNS	9 ± 1	4 of 4	2.62	Up
Larval Salivary gland	6 ± 0	1 of 4	1.62	None
Larval midgut	6 ± 0	1 of 4	1.74	None
Larval tubule	10 ± 1	4 of 4	2.90	Up
Larval hindgut	6 ± 1	3 of 4	1.66	None
Larval fat body	7 ± 1	1 of 4	1.90	None
Larval trachea	44 ± 1	4 of 4	11.94	Up
Larval carcass	6 ± 0	3 of 4	1.79	None
S2 cells (growing)	48 ± 1	4 of 4	13.05	Up
Whole fly	3 ± 1	0 of 4

(CG6340):

Annotation Number : CG6340
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030648
Gbrowse : chrX:15376409-15380642 (+) // 100.0 //
Probeset : 1632665_a_at
Accessions : protein= NP_573034; /// NP_727861; /// NP_727862;, nucleotide= NM_132806; /// NM_167447; /// NM_167448;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030648.
BDGP gene expression has embryonic in situ data for CG6340: 10 pix of staining in 11 body parts.
BioGrid reports that CG6340 interacts with CG6843 .
VDRC has 3 RNAi stocks for FBgn0030648 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	630 ± 25	4 of 4	3.90	Up
Head	216 ± 5	4 of 4	1.30	Up
Eye	245 ± 14	4 of 4	1.52	Up
Thoracicoabdominal ganglion	490 ± 20	4 of 4	3.00	Up
Salivary gland	273 ± 4	4 of 4	1.69	Up
Crop	144 ± 7	4 of 4	0.90	None
Midgut	124 ± 3	4 of 4	0.80	None
Tubule	145 ± 6	4 of 4	0.90	Down
Hindgut	132 ± 2	4 of 4	0.80	None
Heart	117 ± 8	4 of 4	0.73	None
Fat body	133 ± 14	4 of 4	0.83	None
Ovary	275 ± 5	4 of 4	1.70	Up
Testis	196 ± 3	4 of 4	1.20	None
Male accessory glands	218 ± 10	4 of 4	1.30	Up
Virgin spermatheca	209 ± 12	4 of 4	1.30	None
Mated spermatheca	210 ± 6	4 of 4	1.30	None
Adult carcass	166 ± 10	4 of 4	1.00	None
Larval CNS	433 ± 24	4 of 4	2.68	Up
Larval Salivary gland	192 ± 10	4 of 4	1.19	None
Larval midgut	99 ± 5	4 of 4	0.61	Down
Larval tubule	135 ± 5	4 of 4	0.80	None
Larval hindgut	111 ± 9	4 of 4	0.69	None
Larval fat body	111 ± 6	4 of 4	0.70	None
Larval trachea	237 ± 22	4 of 4	1.47	Up
Larval carcass	133 ± 8	4 of 4	0.82	None
S2 cells (growing)	152 ± 4	4 of 4	0.95	None
Whole fly	161 ± 17	4 of 4

(CG6340):

Annotation Number : CG6340
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030648
Gbrowse : chrX:15376399-15378755 (+) // 100.0 //
Probeset : 1633367_at
Accessions : protein= NP_573034; /// NP_727861; /// NP_727862;, nucleotide= NM_132806; /// NM_167447; /// NM_167448;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030648.
BDGP gene expression has embryonic in situ data for CG6340: 10 pix of staining in 11 body parts.
BioGrid reports that CG6340 interacts with CG6843 .
VDRC has 3 RNAi stocks for FBgn0030648 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	17 ± 2	4 of 4	2.20	Up
Head	2 ± 0	0 of 4	0.30	Down
Eye	3 ± 1	0 of 4	0.40	Down
Thoracicoabdominal ganglion	14 ± 0	1 of 4	1.80	Up
Salivary gland	7 ± 3	0 of 4	0.93	None
Crop	12 ± 1	1 of 4	1.50	None
Midgut	11 ± 1	1 of 4	1.40	None
Tubule	4 ± 0	0 of 4	0.50	Down
Hindgut	8 ± 0	0 of 4	1.00	None
Heart	3 ± 1	1 of 4	0.45	Down
Fat body	5 ± 2	0 of 4	0.68	None
Ovary	13 ± 0	4 of 4	1.60	Up
Testis	4 ± 0	0 of 4	0.60	Down
Male accessory glands	7 ± 3	0 of 4	0.90	None
Virgin spermatheca	2 ± 1	0 of 4	0.32	Down
Mated spermatheca	2 ± 0	0 of 4	0.26	Down
Adult carcass	11 ± 1	0 of 4	1.30	None
Larval CNS	15 ± 3	4 of 4	1.83	Up
Larval Salivary gland	9 ± 2	0 of 4	1.21	None
Larval midgut	3 ± 1	0 of 4	0.42	Down
Larval tubule	10 ± 1	1 of 4	1.30	None
Larval hindgut	6 ± 1	1 of 4	0.81	None
Larval fat body	14 ± 2	2 of 4	1.80	None
Larval trachea	9 ± 2	3 of 4	1.16	None
Larval carcass	7 ± 0	0 of 4	0.93	None
S2 cells (growing)	8 ± 1	1 of 4	1.00	None
Whole fly	8 ± 1	1 of 4

(CG6340):

Annotation Number : CG6340
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030648
Gbrowse : chrX:15376399-15378755 (+) // 100.0 //
Probeset : 1631096_a_at
Accessions : protein= NP_573034; /// NP_727861; /// NP_727862;, nucleotide= NM_132806; /// NM_167447; /// NM_167448;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030648.
BDGP gene expression has embryonic in situ data for CG6340: 10 pix of staining in 11 body parts.
BioGrid reports that CG6340 interacts with CG6843 .
VDRC has 3 RNAi stocks for FBgn0030648 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	68 ± 4	4 of 4	2.90	Up
Head	21 ± 2	4 of 4	0.90	None
Eye	30 ± 2	4 of 4	1.29	None
Thoracicoabdominal ganglion	29 ± 3	4 of 4	1.30	None
Salivary gland	26 ± 6	0 of 4	1.11	None
Crop	21 ± 1	4 of 4	0.90	None
Midgut	11 ± 1	0 of 4	0.50	Down
Tubule	9 ± 0	0 of 4	0.40	Down
Hindgut	16 ± 2	1 of 4	0.70	None
Heart	14 ± 2	2 of 4	0.60	Down
Fat body	15 ± 5	0 of 4	0.66	None
Ovary	40 ± 3	4 of 4	1.70	Up
Testis	24 ± 1	4 of 4	1.00	None
Male accessory glands	15 ± 2	0 of 4	0.60	None
Virgin spermatheca	9 ± 2	0 of 4	0.39	Down
Mated spermatheca	10 ± 1	0 of 4	0.46	Down
Adult carcass	12 ± 3	1 of 4	0.50	Down
Larval CNS	22 ± 3	4 of 4	0.95	None
Larval Salivary gland	12 ± 0	2 of 4	0.53	Down
Larval midgut	4 ± 1	0 of 4	0.19	Down
Larval tubule	17 ± 1	2 of 4	0.70	None
Larval hindgut	10 ± 1	1 of 4	0.46	Down
Larval fat body	17 ± 2	0 of 4	0.70	None
Larval trachea	15 ± 2	4 of 4	0.67	Down
Larval carcass	9 ± 1	0 of 4	0.39	Down
S2 cells (growing)	29 ± 0	4 of 4	1.24	None
Whole fly	23 ± 2	4 of 4

Looking for FBgn0030648. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720