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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030654 through 18771 annotations produced 1 hits



(CG15643):

Annotation Number : CG15643
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030654
Gbrowse : chrX:15464409-15466135 (-) // 100.0 //
Probeset : 1638425_at
Accessions : protein= NP_788909;, nucleotide= NM_176736;
FlyMine data for FBgn0030654.
BDGP gene expression has embryonic in situ data for CG15643: 8 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0030654 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 24 of 4 1.80Up
Head38 14 of 4 0.80Down
Eye33 24 of 4 0.70Down
Thoracicoabdominal ganglion92 24 of 4 1.90Up
Salivary gland19 30 of 4 0.40Down
Crop32 24 of 4 0.70Down
Midgut19 10 of 4 0.40Down
Tubule8 10 of 4 0.20Down
Hindgut22 14 of 4 0.50Down
Heart17 04 of 4 0.36Down
Fat body27 43 of 4 0.57Down
Ovary157 24 of 4 3.20Up
Testis8 11 of 4 0.20Down
Male accessory glands31 12 of 4 0.60Down
Virgin spermatheca21 13 of 4 0.45Down
Mated spermatheca26 13 of 4 0.54Down
Adult carcass18 30 of 4 0.40Down
Larval CNS70 24 of 4 1.44Up
Larval Salivary gland22 04 of 4 0.47Down
Larval midgut18 00 of 4 0.37Down
Larval tubule19 13 of 4 0.40Down
Larval hindgut26 14 of 4 0.54Down
Larval fat body28 34 of 4 0.60Down
Larval trachea35 24 of 4 0.72Down
Larval carcass35 14 of 4 0.72Down
S2 cells (growing)84 14 of 4 1.74Up
Whole fly48 24 of 4

Looking for FBgn0030654. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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