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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030657 through 18771 annotations produced 1 hits

CG15645 (cerv):

Annotation Number : CG15645
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030657
Gbrowse : chrX:15471017-15472017 (-) // 100.0 //
Probeset : 1641733_a_at
Accessions : protein= NP_573043; /// NP_727868;, nucleotide= NM_132815; /// NM_167453;
FlyMine data for FBgn0030657.
BDGP gene expression has embryonic in situ data for CG15645: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030657 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain101 24 of 4 2.20Up
Head42 44 of 4 0.90None
Eye47 14 of 4 1.01None
Thoracicoabdominal ganglion84 54 of 4 1.80Up
Salivary gland72 34 of 4 1.53Up
Crop45 44 of 4 1.00None
Midgut13 10 of 4 0.30Down
Tubule16 12 of 4 0.30Down
Hindgut27 04 of 4 0.60Down
Heart17 04 of 4 0.36Down
Fat body18 42 of 4 0.38Down
Ovary78 34 of 4 1.70Up
Testis51 14 of 4 1.10None
Male accessory glands48 54 of 4 1.00None
Virgin spermatheca30 23 of 4 0.66Down
Mated spermatheca50 24 of 4 1.06None
Adult carcass17 20 of 4 0.40Down
Larval CNS104 44 of 4 2.23Up
Larval Salivary gland63 24 of 4 1.34Up
Larval midgut12 10 of 4 0.25Down
Larval tubule19 12 of 4 0.40Down
Larval hindgut24 14 of 4 0.52Down
Larval fat body32 42 of 4 0.70Down
Larval trachea49 64 of 4 1.04None
Larval carcass33 34 of 4 0.72Down
S2 cells (growing)52 14 of 4 1.12None
Whole fly47 14 of 4

Looking for FBgn0030657. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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