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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030658 through 18771 annotations produced 1 hits



(CG7872):

Annotation Number : CG7872
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030658
Gbrowse : chrX:15472122-15473896 (+) // 100.0 //
Probeset : 1636142_at
Accessions : protein= NP_573044;, nucleotide= NM_132816;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0031072 // heat shock protein binding // inferred from electronic annotation
FlyMine data for FBgn0030658.
BDGP gene expression has embryonic in situ data for CG7872: 13 pix of staining in 5 body parts.
VDRC has 2 RNAi stocks for FBgn0030658 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 14 of 4 0.30Down
Head163 134 of 4 0.50Down
Eye158 104 of 4 0.49Down
Thoracicoabdominal ganglion80 44 of 4 0.30Down
Salivary gland787 324 of 4 2.45Up
Crop226 34 of 4 0.70Down
Midgut172 54 of 4 0.50Down
Tubule293 114 of 4 0.90Down
Hindgut158 54 of 4 0.50Down
Heart272 104 of 4 0.85None
Fat body331 184 of 4 1.03None
Ovary468 164 of 4 1.50Up
Testis196 64 of 4 0.60Down
Male accessory glands721 164 of 4 2.20Up
Virgin spermatheca248 124 of 4 0.77Down
Mated spermatheca278 94 of 4 0.87None
Adult carcass282 104 of 4 0.90None
Larval CNS145 64 of 4 0.45Down
Larval Salivary gland3648 1524 of 411.36Up
Larval midgut180 114 of 4 0.56Down
Larval tubule279 04 of 4 0.90None
Larval hindgut286 214 of 4 0.89None
Larval fat body331 184 of 4 1.00None
Larval trachea259 74 of 4 0.81None
Larval carcass346 424 of 4 1.08None
S2 cells (growing)503 114 of 4 1.57Up
Whole fly321 214 of 4

Looking for FBgn0030658. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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