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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030660 through 18771 annotations produced 1 hits



(CG8097):

Annotation Number : CG8097
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030660
Gbrowse : chrX:15477193-15479073 (+) // 99.76 //
Probeset : 1638317_at
Accessions : protein= NP_573046;, nucleotide= NM_132818;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0030660.
VDRC has 2 RNAi stocks for FBgn0030660 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 14 of 4 0.40Down
Head13 02 of 4 0.20Down
Eye21 04 of 4 0.31Down
Thoracicoabdominal ganglion29 14 of 4 0.40Down
Salivary gland30 33 of 4 0.45Down
Crop27 34 of 4 0.40Down
Midgut16 14 of 4 0.20Down
Tubule18 32 of 4 0.30Down
Hindgut14 23 of 4 0.20Down
Heart14 23 of 4 0.21Down
Fat body32 124 of 4 0.48Down
Ovary154 14 of 4 2.30Up
Testis332 54 of 4 4.90Up
Male accessory glands29 24 of 4 0.40Down
Virgin spermatheca46 14 of 4 0.68Down
Mated spermatheca51 64 of 4 0.76None
Adult carcass13 21 of 4 0.20Down
Larval CNS99 94 of 4 1.48Up
Larval Salivary gland26 24 of 4 0.39Down
Larval midgut9 21 of 4 0.13Down
Larval tubule8 00 of 4 0.10Down
Larval hindgut16 24 of 4 0.24Down
Larval fat body58 243 of 4 0.90None
Larval trachea28 44 of 4 0.43Down
Larval carcass14 24 of 4 0.21Down
S2 cells (growing)45 14 of 4 0.67Down
Whole fly67 34 of 4

Looking for FBgn0030660. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime