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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030663 through 18771 annotations produced 1 hits



(CG8117):

Annotation Number : CG8117
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030663
Gbrowse : chrX:15538323-15538812 (+) // 100.0 //
Probeset : 1638604_at
Accessions : protein= NP_573049;, nucleotide= NM_132821;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003711 // transcription elongation regulator
FlyMine data for FBgn0030663.
VDRC has 3 RNAi stocks for FBgn0030663 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.20None
Head1 00 of 4 0.30None
Eye3 10 of 4 0.79None
Thoracicoabdominal ganglion2 00 of 4 0.60None
Salivary gland6 40 of 4 1.58None
Crop3 11 of 4 0.80None
Midgut3 00 of 4 0.80None
Tubule1 00 of 4 0.40Down
Hindgut4 00 of 4 1.20None
Heart5 22 of 4 1.35None
Fat body6 21 of 4 1.65None
Ovary1 00 of 4 0.40None
Testis35 24 of 4 9.00Up
Male accessory glands6 11 of 4 1.60None
Virgin spermatheca3 10 of 4 0.90None
Mated spermatheca1 00 of 4 0.33None
Adult carcass4 20 of 4 1.10None
Larval CNS0 00 of 4 0.10None
Larval Salivary gland5 12 of 4 1.41None
Larval midgut1 00 of 4 0.26None
Larval tubule3 00 of 4 0.80None
Larval hindgut2 00 of 4 0.62None
Larval fat body12 22 of 4 3.10Up
Larval trachea3 11 of 4 0.82None
Larval carcass3 10 of 4 1.00None
S2 cells (growing)3 11 of 4 0.79None
Whole fly4 11 of 4

Looking for FBgn0030663. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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