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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030665 through 18771 annotations produced 1 hits



(CG15646):

Annotation Number : CG15646
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030665
Gbrowse : chrX:15562094-15563327 (-) // 100.0 //
Probeset : 1632097_at
Accessions : protein= NP_573051;, nucleotide= NM_132823;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030665.
BioGrid reports that CG15646 interacts with CG5692 CG6459 CG8936 CG1591 CG3099 CG32226 CG32369 CG3922 CG3938 CG4276 CG4799 CG5280 CG5733 CG6043 CG7264 CG9124 CG9423 .
VDRC has 2 RNAi stocks for FBgn0030665 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.10None
Head5 10 of 4 3.40None
Eye3 10 of 4 2.05None
Thoracicoabdominal ganglion5 10 of 4 3.70None
Salivary gland9 30 of 4 6.64None
Crop2 10 of 4 2.00None
Midgut2 00 of 4 1.40None
Tubule4 00 of 4 2.70Up
Hindgut6 20 of 4 4.40None
Heart3 10 of 4 2.17None
Fat body5 30 of 4 3.80None
Ovary1 00 of 4 0.90None
Testis14 03 of 4 9.50Up
Male accessory glands5 20 of 4 3.70None
Virgin spermatheca3 00 of 4 2.59Up
Mated spermatheca2 00 of 4 1.53None
Adult carcass7 30 of 4 5.10None
Larval CNS93 204 of 463.24Up
Larval Salivary gland3 00 of 4 2.63Up
Larval midgut4 20 of 4 3.05None
Larval tubule7 20 of 4 4.80None
Larval hindgut3 10 of 4 2.63None
Larval fat body9 41 of 4 6.50None
Larval trachea2 00 of 4 1.54None
Larval carcass8 10 of 4 5.53Up
S2 cells (growing)4 10 of 4 2.85None
Whole fly1 00 of 4

Looking for FBgn0030665. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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