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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030666 through 18771 annotations produced 1 hits


Annotation Number : CG12708
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030666
Gbrowse : chrX:15569533-15571770 (+) // 100.0 //
Probeset : 1628962_at
Accessions : protein= NP_001138199; /// NP_727875;, nucleotide= NM_001144727; /// NM_167455;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030666.
BDGP gene expression has embryonic in situ data for CG12708: 57 pix of staining in 10 body parts.
BioGrid reports that CG12708 interacts with CG15224 CG5408 CG6459 CG17342 CG3052 CG32369 CG3510 CG5333 CG5675 CG8942 .
VDRC has 7 RNAi stocks for FBgn0030666 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.60None
Head1 00 of 4 1.30None
Eye1 00 of 4 0.78None
Thoracicoabdominal ganglion0 00 of 4 0.60None
Salivary gland5 40 of 4 4.49None
Crop0 00 of 4 0.70None
Midgut1 00 of 4 0.80None
Tubule1 00 of 4 1.20None
Hindgut0 00 of 4 0.60None
Heart0 00 of 4 0.76None
Fat body1 00 of 4 0.90None
Ovary15 41 of 412.30Up
Testis0 00 of 4 0.40None
Male accessory glands1 00 of 4 0.90None
Virgin spermatheca1 00 of 4 0.80None
Mated spermatheca0 00 of 4 0.69None
Adult carcass1 10 of 4 1.40None
Larval CNS38 74 of 429.84Up
Larval Salivary gland1 00 of 4 1.31None
Larval midgut2 00 of 4 1.69None
Larval tubule0 00 of 4 0.70None
Larval hindgut0 00 of 4 0.67None
Larval fat body1 00 of 4 1.00None
Larval trachea3 40 of 4 2.90None
Larval carcass1 00 of 4 1.35None
S2 cells (growing)0 00 of 4 0.67None
Whole fly1 00 of 4

Looking for FBgn0030666. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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