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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030668 through 18771 annotations produced 1 hits


Annotation Number : CG8128
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030668
Gbrowse : chrX:15591537-15594069 (+) // 99.74 //
Probeset : 1625297_at
Accessions : protein= NP_573053;, nucleotide= NM_132825;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0030668.
BioGrid reports that CG8128 interacts with CG1034 CG13701 CG1871 CG14119 CG7296 CG32381 CG18806 CG15676 CG15861 CG8328 CG14534 CG2948 CG8914 CG6191 CG30492 CG9193 CG9573 CG10694 CG6358 CG10527 CG32505 CG14827 CG7405 CG6233 CG32045 CG17180 CG7980 CG7948 CG11525 CG17746 CG3850 CG17024 CG3085 CG18745 CG18332 CG5390 CG31811 CG6811 CG31038 CG10539 CG8667 CG3925 CG12085 CG11711 CG6488 CG4184 CG2189 CG8271 CG13625 CG2711 CG11266 CG10328 CG1120 CG4552 CG8591 CG33553 CG4394 CG6521 CG4771 CG11486 CG4878 CG3193 CG14228 CG5009 CG4496 CG17309 CG11849 CG13900 CG17964 CG11380 CG4244 CG18476 CG6923 CG14215 CG18572 CG10447 CG32190 CG11759 Dmel CG32904 CG9027 CG8181 CG13834 .
TRiP has 1 RNAi stocks for FBgn0030668 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030668 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain136 64 of 4 0.60Down
Head236 144 of 4 1.10None
Eye107 94 of 4 0.50Down
Thoracicoabdominal ganglion132 84 of 4 0.60Down
Salivary gland598 234 of 4 2.76Up
Crop356 234 of 4 1.60Up
Midgut597 194 of 4 2.80Up
Tubule2185 584 of 410.10Up
Hindgut298 54 of 4 1.40Up
Heart370 144 of 4 1.71Up
Fat body671 304 of 4 3.10Up
Ovary78 24 of 4 0.40Down
Testis259 24 of 4 1.20None
Male accessory glands118 104 of 4 0.50Down
Virgin spermatheca611 344 of 4 2.82Up
Mated spermatheca457 384 of 4 2.11Up
Adult carcass487 114 of 4 2.30Up
Larval CNS39 74 of 4 0.18Down
Larval Salivary gland71 64 of 4 0.33Down
Larval midgut497 734 of 4 2.30Up
Larval tubule122 54 of 4 0.60Down
Larval hindgut86 84 of 4 0.40Down
Larval fat body69 84 of 4 0.30Down
Larval trachea39 24 of 4 0.18Down
Larval carcass56 64 of 4 0.26Down
S2 cells (growing)111 34 of 4 0.51Down
Whole fly216 184 of 4

Looking for FBgn0030668. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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