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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030669 through 18771 annotations produced 1 hits



(CG9240):

Annotation Number : CG9240
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030669
Gbrowse : chrX:15594198-15595410 (-) // 100.0 //
Probeset : 1628618_at
Accessions : protein= NP_573054;, nucleotide= NM_132826;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0016020 // membrane // inferred
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008236 // serine-type peptidase activity // inferr
FlyMine data for FBgn0030669.
BDGP gene expression has embryonic in situ data for CG9240: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030669 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain399 154 of 4 2.30Up
Head341 124 of 4 1.90Up
Eye863 254 of 4 4.90Up
Thoracicoabdominal ganglion530 164 of 4 3.00Up
Salivary gland394 184 of 4 2.24Up
Crop363 74 of 4 2.10Up
Midgut192 54 of 4 1.10Up
Tubule251 44 of 4 1.40Up
Hindgut261 54 of 4 1.50Up
Heart343 64 of 4 1.95Up
Fat body177 164 of 4 1.01None
Ovary181 44 of 4 1.00None
Testis283 134 of 4 1.60Up
Male accessory glands324 214 of 4 1.80Up
Virgin spermatheca269 104 of 4 1.53Up
Mated spermatheca306 114 of 4 1.74Up
Adult carcass228 134 of 4 1.30Up
Larval CNS251 204 of 4 1.43Up
Larval Salivary gland218 64 of 4 1.24Up
Larval midgut136 94 of 4 0.78Down
Larval tubule253 44 of 4 1.40Up
Larval hindgut198 64 of 4 1.13Up
Larval fat body253 214 of 4 1.40Up
Larval trachea380 264 of 4 2.16Up
Larval carcass199 64 of 4 1.13Up
S2 cells (growing)484 124 of 4 2.75Up
Whole fly176 44 of 4

Looking for FBgn0030669. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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